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004L
Euk-VirCherax_quadricarinatus_iridovirus
004L__YP_009552285__Cherax_quadricarinatus_iridovirus__2035708
Identity
- Accession:
- YP_009552285 ↗
- Protein ID:
- 004L
- Kingdom:
- euk
Quality
74.4
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Iridoviridae›
Decapodiridovirus›
Cherax_quadricarinatus_iridovirus
TaxID: 2035708
Cluster
View cluster (26 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 61-203_223-312_608-637
Domain cluster:
rep: SWI_SNF2_family_helicase_protein__YP_009342180__Lymphocystis_disease_virus_Sa__1898060__D47-271_530-554
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00176.30 best | SNF2-rel_dom | 35.6 | 7.80e-09 | 95.8% | 72.9% |
| PF04851.22 | ResIII | 36.0 | 9.30e-09 | 66.2% | 84.2% |
D2
high
residues 665-775
D3
high
residues 890-1010
D4
medium
residues 313-332_447-607
Domain cluster:
rep: CP025712.1__AUO37541.1__YDC107_5424__00064__D413-546_602-643
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00271.38 best | Helicase_C | 35.9 | 1.10e-08 | 72.4% | 86.4% |
D5
medium
residues 333-401_417-446
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 32.0 | 3.89e-01 | 84.8% | 91.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3889516 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.58 | 30.0 | 2.94e-01 | 84.8% | 45.7% |
| 5051007 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 30.0 | 3.58e-01 | 87.9% | 77.1% |
| 4994844 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.52 | 43.0 | 3.35e-01 | 90.9% | 83.6% |
| 3279360 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.52 | 29.0 | 2.84e-01 | 96.0% | 47.3% |
| 3787163 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.50 | 42.0 | 3.17e-01 | 96.0% | 95.3% |
D6
medium
residues 780-886