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04302015_21_scaffold_10_prodigal-single.1__X__X__00008
Bact-Vir04302015_21_scaffold_10_prodigal-single.1__X__X__00008
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-76
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5iu1B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.67 | 46.0 | 4.02e-01 | 72.2% | 52.7% |
| 4rt0A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.65 | 53.0 | 4.61e-01 | 88.9% | 75.2% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 56.0 | 4.48e-01 | 98.6% | 98.6% |
| 2gpjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 53.0 | 4.80e-01 | 98.6% | 99.0% |
| 2as9B01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 45.0 | 4.10e-01 | 95.8% | 58.4% |
| 1ep3B01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 51.0 | 4.71e-01 | 98.6% | 99.0% |
| 2arzA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 50.0 | 3.96e-01 | 95.8% | 44.7% |
| 2imlA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 47.0 | 4.20e-01 | 93.1% | 58.4% |
| 2ok7A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 50.0 | 4.47e-01 | 100.0% | 96.4% |
| 1n26A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 41.0 | 4.04e-01 | 90.3% | 66.7% |
| 3k6yA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 49.0 | 4.34e-01 | 94.4% | 68.2% |
| 1a8pA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 50.0 | 4.67e-01 | 100.0% | 98.9% |
| 2ec1A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 44.0 | 3.87e-01 | 84.7% | 78.8% |
| 1wi1A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 46.0 | 4.01e-01 | 86.1% | 81.1% |
| 3b5mA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 45.0 | 3.85e-01 | 84.7% | 52.1% |
| 2d5mA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 43.0 | 3.33e-01 | 83.3% | 80.3% |
| 2asfA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 47.0 | 4.03e-01 | 93.1% | 76.8% |
| 4exoA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 39.0 | 3.13e-01 | 70.8% | 34.9% |
| 3zpeA00 | 2.60.90.50 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.57 | 50.0 | 4.09e-01 | 100.0% | 60.9% |
| 3by8A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 36.0 | 2.98e-01 | 70.8% | 35.3% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.57 | 48.0 | 4.70e-01 | 98.6% | 98.7% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.56 | 47.0 | 4.57e-01 | 100.0% | 100.0% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.55 | 48.0 | 4.68e-01 | 100.0% | 100.0% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.55 | 45.0 | 3.56e-01 | 90.3% | 91.1% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 42.0 | 4.22e-01 | 84.7% | 93.4% |
| 1qfjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 46.0 | 4.36e-01 | 98.6% | 97.8% |
| 2eixA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 46.0 | 4.14e-01 | 100.0% | 93.4% |
| 3o2zP00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 39.0 | 3.40e-01 | 77.8% | 58.6% |
| 5aykA07 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 37.0 | 3.26e-01 | 72.2% | 79.1% |
| 5os9A00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.54 | 47.0 | 4.10e-01 | 100.0% | 87.8% |
| 3fssA01 | 2.30.29.120 | Mainly Beta › Roll › PH-domain like › | 0.54 | 42.0 | 3.48e-01 | 86.1% | 64.7% |
| 2lpuA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.54 | 43.0 | 3.45e-01 | 88.9% | 93.2% |
| 3fehA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 41.0 | 3.51e-01 | 84.7% | 71.8% |
| 2dhkA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 41.0 | 3.75e-01 | 84.7% | 78.0% |
| 2vpaA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 43.0 | 3.27e-01 | 95.8% | 35.8% |
| 2d9wA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 41.0 | 3.61e-01 | 84.7% | 88.2% |
| 6euaA01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.53 | 45.0 | 3.73e-01 | 100.0% | 68.3% |
| 4k4kA01 | 2.60.40.2620 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like | 0.52 | 42.0 | 3.56e-01 | 94.4% | 52.0% |
| 1ix2A00 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 37.0 | 3.33e-01 | 88.9% | 53.9% |
| 2yz0A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.51 | 40.0 | 3.35e-01 | 88.9% | 74.6% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.51 | 41.0 | 3.22e-01 | 93.1% | 97.2% |
| 2z13A00 | 2.30.29.170 | Mainly Beta › Roll › PH-domain like › | 0.51 | 39.0 | 3.40e-01 | 84.7% | 73.5% |
| 2lfuA02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 41.0 | 3.52e-01 | 93.1% | 90.7% |
| 1bf5A04 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.50 | 36.0 | 3.24e-01 | 79.2% | 100.0% |
| 1ul7A00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.50 | 40.0 | 3.62e-01 | 88.9% | 82.4% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4255584 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.65 | 56.0 | 5.08e-01 | 98.6% | 91.0% |
| 3810482 | 1.1.7.46 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B | 0.64 | 55.0 | 4.58e-01 | 100.0% | 74.1% |
| 3370724 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 55.0 | 4.77e-01 | 100.0% | 80.9% |
| 3708173 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.63 | 53.0 | 4.28e-01 | 95.8% | 78.6% |
| 4571200 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.63 | 53.0 | 4.87e-01 | 98.6% | 97.0% |
| 5053791 | 1.1.7.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase | 0.63 | 52.0 | 4.36e-01 | 98.6% | 99.3% |
| 3987844 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.62 | 53.0 | 4.89e-01 | 98.6% | 94.7% |
| 3961371 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.62 | 50.0 | 4.94e-01 | 94.4% | 88.7% |
| 4381190 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.62 | 53.0 | 4.77e-01 | 100.0% | 95.2% |
| 3247934 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.62 | 52.0 | 4.87e-01 | 100.0% | 100.0% |
| 3614175 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 40.0 | 3.44e-01 | 72.2% | 43.6% |
| 3781471 | 220.1.1.169 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_26 | 0.61 | 50.0 | 3.90e-01 | 95.8% | 76.0% |
| 3613165 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 52.0 | 4.69e-01 | 100.0% | 94.3% |
| 3172792 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.61 | 51.0 | 4.61e-01 | 100.0% | 97.1% |
| 3279212 | 1.1.7.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_9 | 0.60 | 52.0 | 4.57e-01 | 100.0% | 89.1% |
| 3957374 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.60 | 47.0 | 4.82e-01 | 95.8% | 92.9% |
| 4246480 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.60 | 48.0 | 4.43e-01 | 88.9% | 82.1% |
| 2455725 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.60 | 50.0 | 4.54e-01 | 98.6% | 92.4% |
| 4505406 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 49.0 | 4.55e-01 | 100.0% | 98.0% |
| 4929404 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.58 | 47.0 | 4.27e-01 | 94.4% | 73.3% |
| 3620222 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 45.0 | 3.82e-01 | 84.7% | 78.3% |
| 3972645 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.58 | 49.0 | 4.09e-01 | 100.0% | 69.6% |
| 4935307 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 41.0 | 4.06e-01 | 77.8% | 70.0% |
| 3186464 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.57 | 48.0 | 4.07e-01 | 100.0% | 72.6% |
| 4946348 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.57 | 39.0 | 2.66e-01 | 72.2% | 18.3% |
| 3959825 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 48.0 | 4.28e-01 | 100.0% | 97.3% |
| 3594578 | 4.18.1.0 ↗ | beta barrels › SH3 › Plus3 › Plus3 | 0.57 | 49.0 | 4.24e-01 | 100.0% | 90.0% |
| 5062749 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.56 | 45.0 | 3.91e-01 | 88.9% | 80.7% |
| 3555102 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.56 | 43.0 | 3.71e-01 | 84.7% | 85.8% |
| 3523446 | 220.1.1.2 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 | 0.56 | 42.0 | 3.88e-01 | 84.7% | 82.0% |
| 4012802 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 47.0 | 4.20e-01 | 100.0% | 94.5% |
| 3511551 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 43.0 | 4.65e-01 | 100.0% | 100.0% |
| 4181458 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.55 | 46.0 | 4.12e-01 | 100.0% | 90.9% |
| 4085589 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.55 | 46.0 | 4.54e-01 | 98.6% | 100.0% |
| 4944869 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 38.0 | 3.22e-01 | 72.2% | 42.3% |
| 4011994 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 46.0 | 4.15e-01 | 100.0% | 95.5% |
| 3521698 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.55 | 42.0 | 3.62e-01 | 84.7% | 76.7% |
| 5048387 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.55 | 35.0 | 3.74e-01 | 72.2% | 76.7% |
| 4004549 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.55 | 46.0 | 4.26e-01 | 100.0% | 98.0% |
| 3553821 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 41.0 | 3.60e-01 | 84.7% | 76.7% |
| 4028811 | 10.13.1.0 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A | 0.55 | 42.0 | 3.69e-01 | 86.1% | 75.7% |
| 3708505 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 42.0 | 3.43e-01 | 83.3% | 60.0% |
| 3591171 | 220.1.1.14 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom | 0.55 | 42.0 | 3.46e-01 | 84.7% | 72.9% |
| 3057477 | 220.1.1.146 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NDK7_N | 0.54 | 42.0 | 3.93e-01 | 84.7% | 81.3% |
| 3791851 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 43.0 | 3.55e-01 | 91.7% | 81.4% |
| 3783500 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.54 | 45.0 | 3.83e-01 | 100.0% | 74.1% |
| 3572941 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.54 | 45.0 | 4.10e-01 | 100.0% | 94.3% |
| 3788725 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.54 | 45.0 | 4.05e-01 | 100.0% | 90.9% |
| 3538619 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.54 | 42.0 | 3.49e-01 | 86.1% | 68.5% |
| 3392702 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.53 | 43.0 | 3.19e-01 | 94.4% | 43.3% |
| 4949773 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.53 | 47.0 | 3.76e-01 | 100.0% | 57.9% |
| 3274204 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.53 | 45.0 | 3.62e-01 | 98.6% | 57.3% |
| 3601598 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 40.0 | 3.48e-01 | 84.7% | 66.7% |
| 4963012 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.52 | 39.0 | 3.53e-01 | 83.3% | 90.5% |
| 3936054 | 220.1.1.14 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom | 0.52 | 40.0 | 3.52e-01 | 84.7% | 80.9% |
| 3714935 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 44.0 | 3.55e-01 | 100.0% | 99.4% |
| 3670182 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.51 | 36.0 | 2.98e-01 | 72.2% | 56.0% |
| 3605922 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 45.0 | 4.04e-01 | 98.6% | 71.0% |
| 3265815 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.50 | 41.0 | 3.47e-01 | 100.0% | 78.6% |