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04302015_21_scaffold_10_prodigal-single.1__X__X__00009

Bact-Vir

04302015_21_scaffold_10_prodigal-single.1__X__X__00009

Identity

Kingdom:
phage

Quality

69.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-87
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.81 61.0 5.56e-01 79.1% 76.1%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.78 51.0 6.00e-01 77.9% 100.0%
2yfaB01 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.76 58.0 5.17e-01 80.2% 63.9%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.75 58.0 5.77e-01 81.4% 85.4%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.74 57.0 5.32e-01 82.6% 68.9%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 55.0 5.17e-01 80.2% 87.7%
1hs7A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 55.0 5.30e-01 80.2% 85.6%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.72 59.0 6.00e-01 97.7% 91.8%
7p5hB03 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.70 59.0 5.92e-01 100.0% 92.1%
1zoyD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.70 48.0 4.55e-01 70.9% 81.4%
3p01A01 6.10.140.590 Special › Helix non-globular › Helix Hairpins › 0.70 52.0 5.30e-01 82.6% 81.9%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.69 40.0 5.00e-01 73.3% 100.0%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 47.0 4.43e-01 72.1% 92.5%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 52.0 4.82e-01 81.4% 88.9%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.68 47.0 5.31e-01 100.0% 98.4%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.67 51.0 4.76e-01 81.4% 91.7%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 50.0 5.04e-01 80.2% 92.9%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.66 52.0 5.16e-01 97.7% 83.0%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 48.0 4.58e-01 80.2% 87.7%
2p6vA00 1.20.120.1110 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain 0.65 46.0 4.50e-01 100.0% 67.0%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 49.0 4.55e-01 82.6% 87.5%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 48.0 4.65e-01 81.4% 96.0%
1hciA03 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 48.0 4.37e-01 81.4% 84.2%
3efzB00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.64 54.0 4.07e-01 96.5% 76.4%
7w01A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 49.0 3.64e-01 98.8% 32.4%
3i01A01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 45.0 3.58e-01 100.0% 37.3%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.62 35.0 4.56e-01 95.3% 100.0%
1jqkA03 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.61 44.0 3.53e-01 100.0% 37.7%
3kd3A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.60 39.0 4.55e-01 87.2% 93.3%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.60 49.0 4.76e-01 89.5% 82.7%
4uyeA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.59 52.0 4.85e-01 100.0% 91.7%
7dluA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 43.0 4.07e-01 76.7% 78.1%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 50.0 5.10e-01 98.8% 100.0%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 49.0 4.76e-01 97.7% 83.2%
4cbeA00 1.20.120.1640 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 52.0 3.88e-01 100.0% 98.1%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.57 41.0 4.31e-01 97.7% 88.0%
4qnsA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.57 50.0 4.69e-01 100.0% 88.7%
1s9qA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.56 48.0 3.58e-01 95.3% 55.4%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.55 45.0 4.62e-01 100.0% 96.3%
4akgA13 1.10.8.740 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 47.0 4.78e-01 94.2% 92.9%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 47.0 3.84e-01 97.7% 59.0%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.54 36.0 4.04e-01 72.1% 89.4%
3fvvA02 1.20.1440.100 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function 0.54 40.0 4.23e-01 87.2% 90.7%
2icwG01 1.20.120.390 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 0.53 49.0 4.30e-01 100.0% 87.9%
3wozB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 42.0 3.15e-01 87.2% 49.3%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.52 44.0 4.44e-01 100.0% 95.6%
5z7cA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 42.0 3.44e-01 95.3% 71.6%
1ed1A00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.51 45.0 4.11e-01 100.0% 74.6%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4989360 310.2.1.84 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › HAMP 0.77 47.0 4.04e-01 81.4% 40.8%
3940580 604.6.1.14 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › RasGAP_C 0.75 57.0 5.14e-01 80.2% 77.4%
3309012 604.3.1.1 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.74 57.0 5.13e-01 81.4% 74.8%
3393880 633.11.1.1 alpha bundles › Bromodomain-like › Nqo1C-terminal domain-like › Nqo1C-terminal domain-like › NADH_4Fe-4S 0.74 64.0 6.24e-01 100.0% 87.4%
4061709 633.11.1.1 alpha bundles › Bromodomain-like › Nqo1C-terminal domain-like › Nqo1C-terminal domain-like › NADH_4Fe-4S 0.74 63.0 6.02e-01 100.0% 82.0%
4968367 633.11.1.0 alpha bundles › Bromodomain-like › Nqo1C-terminal domain-like › Nqo1C-terminal domain-like 0.72 61.0 5.79e-01 100.0% 78.1%
3279190 633.11.1.1 alpha bundles › Bromodomain-like › Nqo1C-terminal domain-like › Nqo1C-terminal domain-like › NADH_4Fe-4S 0.71 60.0 5.59e-01 100.0% 74.5%
3167298 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.71 42.0 3.89e-01 100.0% 48.6%
3608615 633.11.1.1 alpha bundles › Bromodomain-like › Nqo1C-terminal domain-like › Nqo1C-terminal domain-like › NADH_4Fe-4S 0.71 60.0 5.65e-01 100.0% 78.1%
3593895 633.11.1.0 alpha bundles › Bromodomain-like › Nqo1C-terminal domain-like › Nqo1C-terminal domain-like 0.70 60.0 5.65e-01 100.0% 79.0%
3801787 604.5.1.39 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PF26581 0.70 54.0 4.62e-01 82.6% 88.9%
3958054 633.11.1.0 alpha bundles › Bromodomain-like › Nqo1C-terminal domain-like › Nqo1C-terminal domain-like 0.69 58.0 5.46e-01 100.0% 78.1%
3329778 109.4.1.1277 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 0.69 43.0 3.11e-01 76.7% 23.5%
5061021 633.11.1.1 alpha bundles › Bromodomain-like › Nqo1C-terminal domain-like › Nqo1C-terminal domain-like › NADH_4Fe-4S 0.68 60.0 5.60e-01 100.0% 82.7%
4029967 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.68 56.0 5.16e-01 100.0% 69.6%
3578718 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.67 51.0 4.99e-01 90.7% 73.7%
3591771 611.8.1.0 alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 0.67 47.0 3.95e-01 74.4% 70.7%
3837289 509.1.1.0 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.67 48.0 5.26e-01 93.0% 100.0%
3449357 150.1.1.110 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF7358 0.66 58.0 4.69e-01 100.0% 88.8%
3658953 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 46.0 4.15e-01 80.2% 52.5%
4935481 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.65 47.0 4.42e-01 75.6% 66.7%
3216082 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 50.0 4.49e-01 80.2% 75.7%
4467849 109.4.1.3080 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29795 0.65 50.0 4.29e-01 82.6% 57.8%
3821967 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.65 47.0 5.01e-01 88.4% 86.7%
5076373 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.64 56.0 5.27e-01 98.8% 97.1%
3833474 611.3.1.0 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.64 44.0 4.23e-01 83.7% 62.0%
4197529 4992.1.1.23 extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N 0.64 43.0 4.04e-01 70.9% 97.3%
3853566 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.63 48.0 4.34e-01 80.2% 76.5%
3992501 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.62 45.0 4.48e-01 100.0% 74.4%
4575178 606.1.1.0 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.62 44.0 3.41e-01 73.3% 75.1%
4029259 3273.1.1.4 alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › CLAMP 0.62 54.0 4.94e-01 100.0% 80.9%
3441543 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.62 44.0 4.08e-01 74.4% 82.7%
3663440 109.4.1.359 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C 0.61 47.0 2.89e-01 83.7% 13.5%
5027767 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.61 43.0 4.08e-01 74.4% 67.6%
4963083 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.61 52.0 3.96e-01 95.3% 84.7%
3737108 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.61 43.0 4.75e-01 98.8% 100.0%
5083713 101.1.2.19 alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.59 43.0 3.90e-01 76.7% 79.2%
3721690 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 50.0 4.41e-01 96.5% 84.6%
3834116 109.4.1.935 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TOR1L1_N 0.58 44.0 2.86e-01 82.6% 25.5%
4343661 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.58 42.0 3.89e-01 83.7% 58.8%
4209030 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.58 42.0 3.88e-01 83.7% 58.8%
3913850 601.19.1.5 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PBC (DEPRECATED) 0.56 42.0 3.72e-01 80.2% 76.8%
4290529 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.55 42.0 3.89e-01 88.4% 64.5%
3929469 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 44.0 3.43e-01 89.5% 63.6%
3190576 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.54 49.0 4.49e-01 100.0% 85.5%
5035910 1030.1.1.1 alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A 0.54 47.0 4.11e-01 100.0% 65.9%
4634964 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.53 41.0 3.76e-01 88.4% 63.6%
4029790 109.54.1.1 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.53 43.0 3.53e-01 90.7% 81.2%
3223457 101.1.2.661 alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD 0.52 41.0 2.86e-01 100.0% 26.1%
3271624 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.52 43.0 2.78e-01 94.2% 22.8%
3473737 109.4.1.570 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps8 0.51 45.0 2.86e-01 98.8% 27.8%
3582573 192.24.1.0 alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain 0.51 40.0 3.72e-01 100.0% 66.4%
3971032 1051.1.1.1 alpha superhelices › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › Putative 3-oxoacyl-(acyl-carrier-protein) synthase N-terminal domain › HOASN 0.51 44.0 4.35e-01 97.7% 95.6%
4988605 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.51 44.0 2.94e-01 100.0% 23.4%