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04302015_21_scaffold_10_prodigal-single.1__X__X__00091

Bact-Vir

04302015_21_scaffold_10_prodigal-single.1__X__X__00091

Identity

Kingdom:
phage

Quality

61.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 78-149
PDB
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mw7A03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.72 54.0 5.38e-01 80.6% 85.3%
4qmfB01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.71 52.0 5.04e-01 79.2% 86.6%
7uinD01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.70 62.0 4.77e-01 100.0% 73.1%
2diuA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.69 52.0 5.19e-01 79.2% 80.8%
4aimA03 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.69 52.0 5.27e-01 80.6% 88.7%
4hkqA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.69 60.0 4.87e-01 100.0% 58.3%
2mzwA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.68 51.0 5.02e-01 79.2% 78.9%
1s5jA03 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.68 59.0 4.68e-01 100.0% 75.2%
2p8tA02 3.30.1360.30 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain 0.68 53.0 4.66e-01 86.1% 88.1%
2dgrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.67 49.0 5.10e-01 79.2% 92.5%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.67 53.0 4.34e-01 86.1% 80.2%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.67 48.0 4.79e-01 79.2% 79.2%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.66 48.0 4.78e-01 77.8% 84.2%
3pcoB04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.66 48.0 4.76e-01 77.8% 84.0%
2c5sA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.66 47.0 3.60e-01 76.4% 36.1%
1wf1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.66 49.0 4.60e-01 80.6% 65.6%
7qddB01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.65 47.0 4.72e-01 76.4% 76.7%
7uvpA02 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.64 46.0 4.69e-01 76.4% 84.1%
1yqhA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 47.0 4.19e-01 79.2% 56.7%
6e4nA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.63 46.0 4.65e-01 76.4% 83.1%
1wg4A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.63 46.0 4.50e-01 76.4% 76.6%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 46.0 4.46e-01 79.2% 75.0%
2ctfA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.62 45.0 4.12e-01 79.2% 60.8%
1rkiA01 3.30.70.1650 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › PDO, CxxC motif 0.62 45.0 4.17e-01 79.2% 61.9%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 45.0 4.07e-01 79.2% 61.2%
3ldgA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.61 41.0 3.08e-01 77.8% 26.3%
3ofgB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 45.0 4.25e-01 79.2% 83.9%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 44.0 4.09e-01 79.2% 66.7%
2e29A01 3.30.70.2280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 42.0 4.18e-01 77.8% 89.5%
5ghrA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.58 43.0 3.66e-01 80.6% 52.0%
2ijrA01 3.30.70.1270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Api92-like domains 0.58 42.0 3.89e-01 79.2% 64.9%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.57 40.0 3.29e-01 76.4% 40.8%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.55 39.0 3.63e-01 76.4% 67.0%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.88e-01 80.6% 74.4%
5ji5A00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.52 45.0 3.03e-01 100.0% 96.7%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3949687 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.74 55.0 4.99e-01 79.2% 65.3%
3967597 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.73 54.0 5.17e-01 79.2% 75.3%
4937548 304.54.1.0 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.73 50.0 5.55e-01 75.0% 92.7%
3591074 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.72 52.0 4.95e-01 76.4% 68.2%
5046059 327.11.2.83 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DUF2096_C 0.72 50.0 5.49e-01 76.4% 94.5%
3301650 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.72 51.0 5.19e-01 75.0% 80.0%
4936417 304.26.1.3 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › DUF2102 0.71 49.0 4.35e-01 79.2% 49.5%
3842726 327.11.2.18 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › DTX3L_KH-like 0.71 52.0 5.42e-01 79.2% 96.9%
4940092 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.71 52.0 5.10e-01 79.2% 82.5%
3529975 327.11.2.18 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › DTX3L_KH-like 0.71 52.0 5.44e-01 79.2% 96.9%
4992482 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.71 52.0 4.96e-01 79.2% 77.6%
4987705 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.70 53.0 5.13e-01 80.6% 83.7%
3568112 327.11.2.53 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27824 0.70 50.0 5.40e-01 80.6% 91.7%
5081509 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.70 51.0 5.02e-01 79.2% 83.7%
3869516 327.11.2.56 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF28453 0.70 51.0 5.32e-01 79.2% 92.3%
2713319 327.16.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.69 50.0 5.25e-01 77.8% 84.6%
4033553 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.68 49.0 4.39e-01 77.8% 60.0%
3601388 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.68 49.0 4.92e-01 79.2% 80.0%
5039720 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.68 49.0 4.84e-01 79.2% 81.2%
3602246 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.67 50.0 4.80e-01 80.6% 78.8%
5033817 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.67 49.0 4.82e-01 79.2% 82.5%
4080161 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.67 49.0 4.91e-01 79.2% 82.7%
4033172 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.67 50.0 4.83e-01 79.2% 73.8%
5030234 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.67 49.0 4.98e-01 79.2% 81.4%
4019157 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.66 47.0 4.18e-01 76.4% 54.6%
63976 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.66 50.0 4.33e-01 80.6% 53.6%
5040129 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.66 48.0 4.41e-01 77.8% 61.1%
4180000 304.9.1.38 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SET_assoc 0.66 52.0 4.83e-01 86.1% 86.7%
3173839 327.11.2.75 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF29983 0.65 51.0 5.03e-01 84.7% 86.7%
4215184 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.65 49.0 4.99e-01 80.6% 82.9%
3175020 304.9.1.38 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SET_assoc 0.65 51.0 4.78e-01 86.1% 86.7%
4121019 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.65 47.0 4.95e-01 77.8% 86.2%
3273510 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 48.0 2.83e-01 80.6% 10.5%
4033471 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.63 46.0 4.28e-01 79.2% 63.2%
3988398 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.63 46.0 4.29e-01 79.2% 65.3%
3907339 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.63 54.0 3.83e-01 100.0% 53.9%
4118092 304.28.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.63 46.0 4.57e-01 79.2% 89.3%
4931043 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.63 46.0 4.08e-01 77.8% 57.1%
5050148 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.62 46.0 3.83e-01 79.2% 50.4%
5082529 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.62 45.0 3.78e-01 79.2% 44.4%
5025732 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.62 46.0 3.91e-01 80.6% 52.0%
4661896 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.62 45.0 4.64e-01 77.8% 87.7%
4938185 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.61 46.0 3.84e-01 80.6% 49.2%
4983148 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.61 46.0 3.84e-01 80.6% 50.4%
4995246 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.61 44.0 3.79e-01 79.2% 49.6%
3756436 304.9.1.120 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4523 0.61 44.0 4.20e-01 80.6% 81.1%
3877589 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.60 43.0 4.65e-01 76.4% 91.7%
5067578 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.60 44.0 3.78e-01 80.6% 50.4%
4027012 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.60 43.0 3.73e-01 79.2% 49.6%
4037091 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.60 44.0 3.88e-01 80.6% 70.4%
4012195 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.59 44.0 3.63e-01 80.6% 67.4%
4936382 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.59 44.0 3.77e-01 80.6% 52.5%
5066835 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.59 44.0 3.68e-01 80.6% 48.5%
5061465 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.58 42.0 3.63e-01 79.2% 49.6%
4037308 304.117.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg 0.58 50.0 4.82e-01 100.0% 85.9%
5048880 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.58 42.0 3.73e-01 80.6% 52.2%
4940753 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.58 42.0 3.77e-01 80.6% 53.6%
4119705 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.57 43.0 3.57e-01 81.9% 68.1%
3741625 304.9.1.38 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SET_assoc 0.57 48.0 4.21e-01 97.2% 63.5%
4324536 304.9.1.38 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SET_assoc 0.57 47.0 4.24e-01 98.6% 70.9%
5043684 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.55 40.0 3.48e-01 80.6% 51.2%
5053351 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 37.0 3.43e-01 70.8% 55.8%
2997122 7547.1.1.1 a/b three-layered sandwiches › Hypothetical protein TT1679 › Hypothetical protein TT1679 › Hypothetical protein TT1679 › Antibiotic_NAT 0.53 44.0 3.04e-01 94.4% 84.9%
134075 304.9.1.15 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RNA_bind 0.53 43.0 4.01e-01 98.6% 77.5%
4984063 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 36.0 3.34e-01 73.6% 66.3%
5034107 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.37e-01 73.6% 75.3%
3957931 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.42e-01 73.6% 70.0%
4944019 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 34.0 3.42e-01 72.2% 74.7%
D2 medium residues 1-66
PDB