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04302015_21_scaffold_10_prodigal-single.1__X__X__00106
Bact-Vir04302015_21_scaffold_10_prodigal-single.1__X__X__00106
Identity
- Kingdom:
- phage
Quality
78.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-82
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12281.15 best | NTP_transf_8 | 55.4 | 1.20e-14 | 96.8% | 26.2% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t0hA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.66 | 45.0 | 3.89e-01 | 71.0% | 66.7% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.66 | 45.0 | 4.50e-01 | 93.5% | 71.0% |
| 1hbxA01 | 3.40.1810.10 | Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box | 0.61 | 34.0 | 3.32e-01 | 80.6% | 49.3% |
| 6c1qB02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.59 | 48.0 | 3.25e-01 | 100.0% | 66.3% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 40.0 | 3.49e-01 | 74.2% | 84.0% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 3.50e-01 | 75.8% | 87.4% |
| 1pg2A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 42.0 | 2.75e-01 | 87.1% | 15.7% |
| 3wrwA02 | 3.40.50.12030 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein family UPF0261, NC domain | 0.56 | 41.0 | 2.92e-01 | 82.3% | 40.9% |
| 1r1uB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 3.58e-01 | 77.4% | 82.8% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.31e-01 | 74.2% | 83.8% |
| 5hs7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.33e-01 | 74.2% | 86.7% |
| 5y6qB02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.55 | 39.0 | 3.36e-01 | 95.2% | 45.3% |
| 1ybtB00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.55 | 47.0 | 3.43e-01 | 96.8% | 73.8% |
| 2fzfA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 48.0 | 3.65e-01 | 100.0% | 87.3% |
| 1z7uB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 3.14e-01 | 72.6% | 79.1% |
| 2kpqA01 | 6.10.250.730 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 35.0 | 3.37e-01 | 100.0% | 55.4% |
| 4lq0A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.53 | 41.0 | 3.35e-01 | 95.2% | 91.7% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 37.0 | 3.18e-01 | 74.2% | 82.0% |
| 2fswA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.26e-01 | 77.4% | 81.4% |
| 5hn3A00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.51 | 41.0 | 2.64e-01 | 91.9% | 26.5% |
| 3flkA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.50 | 41.0 | 2.67e-01 | 100.0% | 73.5% |
| 2zgyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 39.0 | 3.12e-01 | 90.3% | 73.6% |
| 1cnzA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.50 | 41.0 | 2.64e-01 | 100.0% | 60.3% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5040839 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.72 | 65.0 | 4.71e-01 | 100.0% | 44.7% |
| 3955662 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.64 | 54.0 | 4.01e-01 | 100.0% | 38.9% |
| 3945964 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.62 | 52.0 | 3.61e-01 | 100.0% | 37.8% |
| 3734491 | 109.3.1.99 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2+Ank_5 | 0.61 | 46.0 | 3.45e-01 | 82.3% | 76.4% |
| 4022652 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 47.0 | 3.08e-01 | 85.5% | 62.6% |
| 5046521 | 3326.1.1.1 ↗ | alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind | 0.60 | 45.0 | 3.67e-01 | 80.6% | 47.5% |
| 3930150 | 5001.1.1.66 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg | 0.59 | 50.0 | 3.29e-01 | 100.0% | 57.7% |
| 3220364 | 6166.1.1.1 ↗ | alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 | 0.59 | 47.0 | 3.34e-01 | 90.3% | 65.5% |
| 3716320 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 51.0 | 4.10e-01 | 100.0% | 59.2% |
| 4972761 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 46.0 | 3.29e-01 | 100.0% | 38.7% |
| 4031161 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.56 | 40.0 | 3.38e-01 | 75.8% | 76.4% |
| 4928248 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 39.0 | 3.16e-01 | 74.2% | 89.2% |
| 3686534 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 30.0 | 3.41e-01 | 100.0% | 66.7% |
| 3169426 | 109.26.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C | 0.56 | 47.0 | 2.63e-01 | 100.0% | 7.4% |
| 4989274 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 40.0 | 3.17e-01 | 79.0% | 76.4% |
| 3715197 | 109.4.1.222 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DCB | 0.55 | 47.0 | 3.36e-01 | 100.0% | 62.0% |
| 3602213 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 40.0 | 3.14e-01 | 80.6% | 49.7% |
| 4989275 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 39.0 | 3.18e-01 | 77.4% | 81.5% |
| 4417592 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.55 | 46.0 | 2.76e-01 | 100.0% | 19.0% |
| 3939832 | 2006.1.6.39 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Mat89Bb | 0.55 | 40.0 | 2.72e-01 | 79.0% | 83.3% |
| 4962527 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.54 | 48.0 | 3.56e-01 | 100.0% | 44.4% |
| 3281724 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.54 | 38.0 | 3.12e-01 | 75.8% | 65.6% |
| 4938227 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.54 | 37.0 | 3.20e-01 | 74.2% | 73.6% |
| 5025119 | 3281.1.1.1 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M | 0.54 | 47.0 | 2.73e-01 | 100.0% | 26.8% |
| 3487960 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 45.0 | 3.01e-01 | 100.0% | 22.6% |
| 5064976 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 41.0 | 3.11e-01 | 85.5% | 76.9% |
| 3966549 | 10.12.1.64 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ExsA_N | 0.53 | 40.0 | 3.08e-01 | 87.1% | 96.4% |
| 5049164 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.52 | 44.0 | 3.53e-01 | 98.4% | 88.5% |
| 3717798 | 109.4.1.628 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS | 0.52 | 43.0 | 2.59e-01 | 100.0% | 12.3% |
| 5001441 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 3.38e-01 | 90.3% | 82.4% |
| 3205225 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.52 | 42.0 | 3.64e-01 | 98.4% | 83.6% |
| 4933638 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.52 | 43.0 | 3.45e-01 | 100.0% | 75.0% |
| 3685646 | 109.4.1.1158 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IPO11 | 0.51 | 44.0 | 2.73e-01 | 100.0% | 40.5% |
| 3785509 | 101.1.2.113 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNase_H2-Ydr279 | 0.51 | 38.0 | 2.76e-01 | 82.3% | 73.7% |
| 3890461 | 2003.1.5.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS | 0.51 | 42.0 | 2.83e-01 | 100.0% | 22.4% |
| 4592147 | 109.4.1.1265 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF, PUF_NOP9 | 0.51 | 39.0 | 2.32e-01 | 87.1% | 24.8% |
| 4947248 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 40.0 | 3.29e-01 | 87.1% | 95.7% |
| 4391867 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.50 | 40.0 | 2.40e-01 | 87.1% | 12.1% |