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04302015_21_scaffold_10_prodigal-single.1__X__X__00216

Bact-Vir

04302015_21_scaffold_10_prodigal-single.1__X__X__00216

Identity

Kingdom:
phage

Quality

82.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-112
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 41.0 5.33e-01 70.0% 98.4%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.68 56.0 5.36e-01 88.2% 83.5%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.62 39.0 4.44e-01 71.8% 88.3%
1v29B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 4.70e-01 72.7% 96.9%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.58 40.0 3.76e-01 70.9% 79.1%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.57 39.0 3.59e-01 70.9% 78.5%
1vwxB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 43.0 3.66e-01 83.6% 96.7%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 37.0 3.46e-01 71.8% 56.9%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.52 39.0 3.39e-01 78.2% 72.3%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.51 34.0 3.40e-01 71.8% 64.0%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 3.41e-01 80.9% 95.2%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 37.0 3.37e-01 76.4% 79.2%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.79 45.0 5.89e-01 75.5% 98.5%
4026274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 50.0 4.55e-01 77.3% 51.4%
3959531 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 42.0 5.14e-01 70.0% 88.6%
3743730 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 42.0 5.03e-01 71.8% 85.3%
3563220 4.1.1.220 ↗ beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.71 43.0 4.92e-01 70.9% 81.2%
3650798 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 53.0 5.22e-01 77.3% 93.9%
3540253 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.71 46.0 4.91e-01 70.9% 75.8%
3659671 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.68 43.0 5.20e-01 72.7% 100.0%
3828823 3324.1.1.2 ↗ extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases 0.68 56.0 4.21e-01 89.1% 61.1%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 44.0 5.36e-01 70.0% 100.0%
3624306 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.67 48.0 4.61e-01 73.6% 89.6%
3208838 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.66 46.0 4.09e-01 71.8% 61.3%
5036729 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.66 56.0 5.45e-01 90.0% 85.0%
4215369 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.66 55.0 5.25e-01 88.2% 85.6%
5000523 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.65 54.0 5.30e-01 89.1% 88.3%
4643742 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.84e-01 71.8% 94.1%
3936663 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 44.0 4.25e-01 73.6% 76.8%
4932514 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.62 52.0 5.04e-01 89.1% 84.2%
3591211 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 42.0 4.89e-01 73.6% 100.0%
3991896 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 43.0 4.64e-01 75.5% 88.4%
3670468 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.58 40.0 3.82e-01 70.9% 66.2%
3599666 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 40.0 2.67e-01 71.8% 21.1%
3907176 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.58 40.0 4.36e-01 71.8% 90.0%
3770804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 38.0 4.27e-01 70.9% 94.1%
3710131 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.55 43.0 3.93e-01 81.8% 76.4%
4989873 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.54 38.0 3.74e-01 72.7% 95.8%
4020922 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 41.0 2.98e-01 80.9% 52.1%
3472806 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.51 43.0 3.37e-01 92.7% 56.5%
3276425 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.51 43.0 3.28e-01 96.4% 73.3%