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04302015_21_scaffold_6_prodigal-single.1__X__X__00010

Bact-Vir

04302015_21_scaffold_6_prodigal-single.1__X__X__00010

Identity

Kingdom:
phage

Quality

88.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-100
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1odhA02 3.30.70.3530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GCM motif 0.59 32.0 3.72e-01 88.8% 76.3%
5yk4A04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.59 41.0 3.61e-01 71.9% 62.5%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 42.0 2.80e-01 80.9% 31.5%
1gcbA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 42.0 2.78e-01 80.9% 31.2%
7wu7501 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 35.0 3.14e-01 70.8% 53.2%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3507846 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 39.0 2.37e-01 73.0% 25.9%
3695374 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 41.0 2.59e-01 78.7% 48.0%
3691938 219.1.1.17 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1_2 0.52 45.0 2.90e-01 100.0% 82.6%
4799073 309.1.1.4 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.51 32.0 3.19e-01 94.4% 58.2%