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04302015_21_scaffold_6_prodigal-single.1__X__X__00012
Bact-Vir04302015_21_scaffold_6_prodigal-single.1__X__X__00012
Identity
- Kingdom:
- phage
Quality
72.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-66
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nrnA02 | 3.90.660.50 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.71 | 60.0 | 4.36e-01 | 92.3% | 61.9% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.71 | 55.0 | 4.89e-01 | 86.2% | 92.7% |
| 1hq6B00 | 3.50.20.10 | Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B | 0.70 | 61.0 | 4.22e-01 | 100.0% | 35.5% |
| 1iarB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 46.0 | 4.13e-01 | 96.9% | 50.0% |
| 4mt1A06 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.67 | 56.0 | 4.85e-01 | 93.8% | 99.0% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.66 | 51.0 | 4.87e-01 | 98.5% | 72.4% |
| 4wtxA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 47.0 | 4.20e-01 | 96.9% | 52.6% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.65 | 55.0 | 4.63e-01 | 95.4% | 84.8% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.64 | 52.0 | 5.02e-01 | 100.0% | 78.9% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.64 | 50.0 | 4.33e-01 | 93.8% | 52.8% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.64 | 56.0 | 5.17e-01 | 100.0% | 98.8% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.64 | 52.0 | 5.15e-01 | 100.0% | 85.9% |
| 1an9A02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.61 | 52.0 | 4.18e-01 | 100.0% | 61.7% |
| 1et9A01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.61 | 50.0 | 4.30e-01 | 93.8% | 88.2% |
| 2jdjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 54.0 | 4.63e-01 | 100.0% | 97.1% |
| 3q8pB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.60 | 50.0 | 4.34e-01 | 96.9% | 62.0% |
| 6kryA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.60 | 49.0 | 3.97e-01 | 95.4% | 71.7% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 49.0 | 4.65e-01 | 96.9% | 78.5% |
| 2pgcA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 51.0 | 4.35e-01 | 96.9% | 87.7% |
| 3n01A00 | 3.30.70.2470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein-tyrosine phosphatase receptor IA-2 ectodomain | 0.58 | 48.0 | 4.41e-01 | 95.4% | 100.0% |
| 5cw3C01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.57 | 49.0 | 3.83e-01 | 100.0% | 64.6% |
| 1wfnA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 40.0 | 3.68e-01 | 95.4% | 55.7% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.56 | 47.0 | 4.14e-01 | 96.9% | 76.0% |
| 7bv5D01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 44.0 | 3.48e-01 | 95.4% | 53.4% |
| 2z5bB01 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.55 | 41.0 | 3.40e-01 | 80.0% | 46.2% |
| 4qkbA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.55 | 44.0 | 3.17e-01 | 93.8% | 30.2% |
| 3qvnA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.54 | 41.0 | 3.44e-01 | 96.9% | 46.2% |
| 1vjvA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 45.0 | 3.00e-01 | 96.9% | 34.3% |
| 1dbuA00 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.54 | 47.0 | 3.64e-01 | 100.0% | 66.4% |
| 3ohsX02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 41.0 | 2.95e-01 | 86.2% | 100.0% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.53 | 40.0 | 3.45e-01 | 95.4% | 47.9% |
| 2x7qA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 44.0 | 3.83e-01 | 93.8% | 100.0% |
| 4kkdB04 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 41.0 | 3.51e-01 | 100.0% | 49.2% |
| 3wnoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 41.0 | 3.59e-01 | 90.8% | 77.0% |
| 4ksnA00 | 6.20.250.80 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.50 | 42.0 | 4.23e-01 | 95.4% | 93.8% |
| 1d0nA06 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.50 | 44.0 | 3.58e-01 | 100.0% | 52.0% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4483977 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.77 | 66.0 | 5.71e-01 | 95.4% | 95.0% |
| 4940484 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.70 | 59.0 | 5.53e-01 | 92.3% | 95.0% |
| 3501168 | 304.113.1.1 ↗ | a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 | 0.70 | 55.0 | 4.77e-01 | 87.7% | 95.2% |
| 4942869 | 303.1.1.1 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC | 0.70 | 60.0 | 4.52e-01 | 100.0% | 45.9% |
| 3973467 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.67 | 57.0 | 3.56e-01 | 100.0% | 29.3% |
| 3523304 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 46.0 | 4.07e-01 | 96.9% | 48.0% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.66 | 52.0 | 5.33e-01 | 100.0% | 90.6% |
| 2741079 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.65 | 52.0 | 5.12e-01 | 96.9% | 83.1% |
| 3551719 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.65 | 54.0 | 5.17e-01 | 100.0% | 81.3% |
| 3573883 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.65 | 54.0 | 4.45e-01 | 96.9% | 50.4% |
| 2106284 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.65 | 52.0 | 5.21e-01 | 96.9% | 88.1% |
| 5051729 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.64 | 43.0 | 3.27e-01 | 80.0% | 28.1% |
| 4128974 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.64 | 54.0 | 5.15e-01 | 100.0% | 80.0% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.64 | 49.0 | 5.10e-01 | 98.5% | 96.7% |
| 1871815 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.63 | 54.0 | 4.65e-01 | 100.0% | 95.5% |
| 4160542 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.63 | 48.0 | 4.99e-01 | 95.4% | 96.6% |
| 2543708 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.63 | 55.0 | 4.96e-01 | 100.0% | 94.6% |
| 2831852 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.63 | 52.0 | 4.55e-01 | 100.0% | 60.4% |
| 3515524 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 51.0 | 4.00e-01 | 90.8% | 67.1% |
| 3894910 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.62 | 53.0 | 3.41e-01 | 100.0% | 33.1% |
| 3214728 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.62 | 52.0 | 3.34e-01 | 100.0% | 30.7% |
| 1442666 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.62 | 54.0 | 5.03e-01 | 96.9% | 77.8% |
| 3403049 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.62 | 44.0 | 3.95e-01 | 96.9% | 52.6% |
| 3787053 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.61 | 49.0 | 3.97e-01 | 92.3% | 46.4% |
| 4940922 | 2003.1.2.300 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat | 0.61 | 52.0 | 3.25e-01 | 100.0% | 31.2% |
| 4611799 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 44.0 | 3.88e-01 | 100.0% | 50.5% |
| 4294933 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.60 | 45.0 | 3.37e-01 | 81.5% | 80.0% |
| 3352760 | 321.1.1.1 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C | 0.60 | 49.0 | 3.24e-01 | 100.0% | 58.0% |
| 4969338 | 212.1.1.12 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 | 0.60 | 42.0 | 3.46e-01 | 75.4% | 61.6% |
| 3286115 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.60 | 49.0 | 4.16e-01 | 95.4% | 100.0% |
| 3739712 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.59 | 39.0 | 3.16e-01 | 78.5% | 33.1% |
| 4589616 | 7567.1.1.1 ↗ | a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L | 0.59 | 44.0 | 3.06e-01 | 81.5% | 48.5% |
| 4572621 | 7567.1.1.1 ↗ | a/b three-layered sandwiches › LmbE-like › LmbE-like › LmbE-like › PIG-L | 0.59 | 45.0 | 3.09e-01 | 83.1% | 49.1% |
| 3915206 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.59 | 50.0 | 3.72e-01 | 96.9% | 65.7% |
| 3611231 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.59 | 41.0 | 3.60e-01 | 75.4% | 93.3% |
| 4332626 | 3532.1.1.0 ↗ | alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase | 0.59 | 49.0 | 2.92e-01 | 100.0% | 11.4% |
| 3506832 | 304.20.1.1 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind | 0.58 | 49.0 | 4.01e-01 | 100.0% | 93.1% |
| 3701221 | 304.43.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 | 0.58 | 46.0 | 4.03e-01 | 92.3% | 89.5% |
| 3281849 | 303.1.1.3 ↗ | a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › DUF4189 | 0.58 | 48.0 | 4.17e-01 | 100.0% | 98.2% |
| 4944071 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 48.0 | 4.08e-01 | 96.9% | 57.4% |
| 3993633 | 2492.1.1.42 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB, MitMem_reg | 0.57 | 49.0 | 3.48e-01 | 100.0% | 41.1% |
| 4316907 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 43.0 | 3.52e-01 | 100.0% | 40.7% |
| 3472190 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.55 | 47.0 | 3.10e-01 | 98.5% | 21.0% |
| 3246837 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.55 | 44.0 | 3.96e-01 | 95.4% | 93.0% |
| 3928420 | 3680.1.1.0 ↗ | a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain | 0.55 | 43.0 | 3.48e-01 | 93.8% | 77.3% |
| 3333290 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.54 | 45.0 | 3.45e-01 | 100.0% | 67.8% |
| 3597115 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.54 | 44.0 | 3.69e-01 | 96.9% | 52.2% |
| 4330212 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.53 | 42.0 | 3.66e-01 | 100.0% | 53.0% |
| 3290896 | 4244.1.1.6 ↗ | a/b three-layered sandwiches › EreA/ChaN-like › EreA/ChaN-like › EreA/ChaN-like › DUF5682 | 0.53 | 44.0 | 3.10e-01 | 93.8% | 78.6% |
| 3393085 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 37.0 | 3.57e-01 | 73.8% | 64.0% |
| 3169435 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.53 | 43.0 | 3.22e-01 | 95.4% | 70.0% |
| 4995300 | 7523.1.1.30 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_11 | 0.53 | 42.0 | 3.42e-01 | 96.9% | 44.4% |
| 3219557 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.51 | 39.0 | 4.09e-01 | 93.8% | 93.3% |
| 3740347 | 10.32.1.203 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin | 0.51 | 40.0 | 3.13e-01 | 92.3% | 78.8% |
| 2723970 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.51 | 42.0 | 3.57e-01 | 100.0% | 72.7% |
| 3579723 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.50 | 43.0 | 4.34e-01 | 100.0% | 100.0% |