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04302015_21_scaffold_6_prodigal-single.1__X__X__00102

Bact-Vir

04302015_21_scaffold_6_prodigal-single.1__X__X__00102

Identity

Kingdom:
phage

Quality

61.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-50
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.71 56.0 3.90e-01 90.9% 27.1%
4hh3A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 52.0 3.93e-01 97.7% 35.1%
3ewkA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 53.0 4.11e-01 93.2% 43.0%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 52.0 3.99e-01 97.7% 84.1%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 48.0 3.56e-01 93.2% 31.7%
2r78C00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 46.0 3.44e-01 100.0% 32.8%
4hoiB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 49.0 3.70e-01 95.5% 37.7%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 51.0 3.76e-01 97.7% 37.8%
3mr0A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 40.0 3.08e-01 72.7% 57.3%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 45.0 3.59e-01 97.7% 40.2%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.58 47.0 4.67e-01 100.0% 95.7%
2b02A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 46.0 3.65e-01 97.7% 42.3%
3ewkA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 46.0 3.71e-01 100.0% 44.7%
1mufA01 2.20.110.10 Mainly Beta › Single Sheet › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain › Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 0.56 39.0 3.02e-01 100.0% 29.2%
1zj8A04 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.56 44.0 3.15e-01 90.9% 30.4%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 44.0 3.66e-01 88.6% 54.9%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 42.0 2.65e-01 100.0% 26.2%
3lyxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 45.0 3.44e-01 100.0% 36.7%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.56 41.0 3.00e-01 88.6% 30.0%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 47.0 3.53e-01 100.0% 37.3%
1g0sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 40.0 2.73e-01 84.1% 53.2%
5dynA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 40.0 3.15e-01 100.0% 33.0%
4zohA02 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.55 42.0 3.15e-01 97.7% 29.3%
3qz4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 40.0 2.54e-01 88.6% 14.7%
3aapA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 43.0 3.37e-01 100.0% 50.4%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.25e-01 97.7% 37.5%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 45.0 3.59e-01 100.0% 65.7%
1bywA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 45.0 3.50e-01 100.0% 40.0%
4yisB02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 41.0 3.22e-01 100.0% 75.7%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 44.0 3.24e-01 100.0% 31.9%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.33e-01 97.7% 35.8%
3c19A02 3.10.20.300 Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain 0.54 40.0 3.49e-01 90.9% 50.0%
3lifB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 41.0 3.00e-01 93.2% 27.8%
6kjuB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 42.0 3.24e-01 93.2% 36.8%
4iu2B01 2.60.40.3810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 38.0 3.00e-01 84.1% 59.0%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 40.0 2.48e-01 100.0% 12.5%
2pd8B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 42.0 3.07e-01 97.7% 30.0%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.00e-01 100.0% 29.1%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.11e-01 88.6% 78.1%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 41.0 3.72e-01 90.9% 63.5%
4ehoA04 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 39.0 3.05e-01 93.2% 35.5%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 3.44e-01 97.7% 94.4%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.51 44.0 2.96e-01 100.0% 84.0%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.51 37.0 2.71e-01 97.7% 25.9%
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.51 38.0 3.67e-01 100.0% 70.5%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 40.0 2.96e-01 95.5% 78.2%
2yh9B00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.51 40.0 3.50e-01 90.9% 55.9%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 2.96e-01 88.6% 36.6%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.51 35.0 2.65e-01 86.4% 27.2%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.50 43.0 3.32e-01 100.0% 59.8%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5045708 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.72 52.0 4.47e-01 93.2% 48.6%
3790766 220.1.1.151 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MRCK 0.68 48.0 3.39e-01 95.5% 21.8%
4503571 223.1.1.83 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_13 0.64 50.0 3.15e-01 88.6% 16.3%
5062858 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.63 52.0 3.90e-01 95.5% 37.4%
4986904 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.62 52.0 3.24e-01 95.5% 17.3%
4945265 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 51.0 3.89e-01 100.0% 40.9%
4989206 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.61 53.0 3.69e-01 95.5% 33.6%
5045588 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 42.0 3.16e-01 75.0% 56.7%
5048056 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.61 51.0 3.77e-01 100.0% 37.6%
4952183 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.61 50.0 3.92e-01 100.0% 41.9%
5045423 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.61 52.0 3.28e-01 97.7% 19.2%
4997261 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.60 50.0 3.98e-01 100.0% 44.0%
3284786 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.60 49.0 3.44e-01 95.5% 30.7%
5044943 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.60 50.0 3.63e-01 97.7% 33.1%
4980710 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 50.0 3.79e-01 97.7% 40.0%
4950593 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.60 49.0 3.55e-01 97.7% 31.9%
5073973 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.59 49.0 3.60e-01 97.7% 34.1%
4988390 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.59 49.0 3.83e-01 100.0% 41.9%
5021847 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.59 47.0 3.06e-01 100.0% 19.2%
4958865 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.59 49.0 3.58e-01 97.7% 35.4%
4960079 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.59 50.0 3.67e-01 97.7% 35.8%
5045471 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.59 49.0 3.67e-01 100.0% 39.2%
3946851 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.59 50.0 3.46e-01 100.0% 28.4%
1840644 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.59 45.0 3.59e-01 97.7% 40.2%
4959374 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.58 47.0 3.58e-01 95.5% 40.0%
3386877 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.58 48.0 3.36e-01 100.0% 30.0%
5068526 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 47.0 3.80e-01 100.0% 44.0%
4996836 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.58 48.0 3.66e-01 97.7% 39.1%
5045368 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.58 47.0 3.44e-01 100.0% 31.4%
4996829 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.58 47.0 2.77e-01 100.0% 10.6%
5002153 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 45.0 3.67e-01 100.0% 43.0%
397995 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.57 46.0 3.68e-01 100.0% 40.7%
3203065 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.57 46.0 3.37e-01 100.0% 30.4%
5033309 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.57 45.0 3.45e-01 100.0% 36.2%
5047125 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.57 47.0 2.95e-01 100.0% 16.5%
4980686 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 46.0 3.61e-01 100.0% 40.0%
3963029 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 47.0 3.92e-01 100.0% 95.3%
3780897 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.57 42.0 2.74e-01 88.6% 16.4%
5002290 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.57 45.0 3.33e-01 95.5% 31.9%
5034548 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.57 46.0 3.55e-01 100.0% 38.3%
3971184 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.57 46.0 3.33e-01 95.5% 32.9%
5004040 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.57 46.0 3.52e-01 100.0% 36.7%
5034545 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.56 47.0 3.43e-01 100.0% 32.6%
5002763 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.56 44.0 4.05e-01 100.0% 67.1%
4873579 4019.1.1.3 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.56 44.0 3.80e-01 93.2% 53.8%
137752 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.56 47.0 3.53e-01 100.0% 37.3%
5017798 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.56 45.0 3.41e-01 97.7% 36.8%
3940178 2004.1.1.107 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C 0.55 45.0 2.80e-01 100.0% 14.6%
3230061 2004.1.1.200 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_25 0.55 44.0 2.77e-01 100.0% 15.1%
3208973 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.55 45.0 3.44e-01 97.7% 38.6%
3731834 7579.1.1.127 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Abhydrolase_3 0.55 41.0 2.52e-01 90.9% 21.8%
4996834 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.55 44.0 3.27e-01 100.0% 32.6%
4551342 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 45.0 3.76e-01 100.0% 51.8%
3968145 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.54 45.0 3.39e-01 100.0% 36.7%
5018829 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.54 44.0 3.30e-01 100.0% 33.8%
4997159 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 45.0 3.21e-01 100.0% 32.4%
4979994 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 43.0 3.21e-01 100.0% 34.8%
3967408 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 43.0 3.23e-01 100.0% 33.8%
4001102 4111.1.1.3 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › DUF1907 0.53 42.0 2.68e-01 100.0% 86.1%
3972990 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 42.0 3.29e-01 100.0% 36.7%
4142766 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.53 39.0 3.05e-01 90.9% 32.3%
3959244 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 43.0 3.58e-01 100.0% 48.9%
3254148 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.53 43.0 3.44e-01 100.0% 44.0%
3973729 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 45.0 3.16e-01 100.0% 81.3%
3973000 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 42.0 2.87e-01 100.0% 23.2%
3967615 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 41.0 3.17e-01 100.0% 37.6%
3703523 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.52 41.0 2.95e-01 97.7% 35.6%
3968855 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 40.0 3.10e-01 100.0% 36.2%
4969129 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 41.0 3.23e-01 95.5% 45.7%
3460576 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.51 38.0 2.54e-01 97.7% 45.4%
None 0.51 35.0 2.16e-01 72.7% 96.5%
4960088 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 44.0 3.24e-01 100.0% 40.8%
3282536 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.51 40.0 3.48e-01 97.7% 56.2%
3438374 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 38.0 2.41e-01 100.0% 16.8%
3819047 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.51 38.0 2.92e-01 97.7% 97.9%
3697067 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.50 36.0 2.97e-01 75.0% 38.8%
3862603 11.1.1.363 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.50 41.0 3.29e-01 95.5% 71.6%