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04302015_21_scaffold_6_prodigal-single.1__X__X__00138
Bact-Vir04302015_21_scaffold_6_prodigal-single.1__X__X__00138
Identity
- Kingdom:
- phage
Quality
65.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 38-100
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.75 | 64.0 | 4.70e-01 | 93.7% | 69.8% |
| 3o5yB00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.67 | 42.0 | 3.17e-01 | 82.5% | 26.5% |
| 3vx8A01 | 3.40.140.100 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain | 0.66 | 50.0 | 3.91e-01 | 82.5% | 39.0% |
| 3b8fB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.64 | 50.0 | 3.99e-01 | 90.5% | 53.5% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.63 | 51.0 | 4.27e-01 | 90.5% | 69.9% |
| 1rzmA01 | 3.30.70.1140 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 | 0.63 | 47.0 | 4.37e-01 | 81.0% | 96.2% |
| 2bvfA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.61 | 51.0 | 3.65e-01 | 96.8% | 74.3% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.61 | 49.0 | 3.62e-01 | 93.7% | 91.0% |
| 2ykfA01 | 3.30.450.280 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.59 | 41.0 | 3.40e-01 | 90.5% | 39.3% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.57 | 33.0 | 3.32e-01 | 79.4% | 53.0% |
| 2je6A01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.55 | 45.0 | 3.10e-01 | 98.4% | 61.7% |
| 1yqsA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 43.0 | 2.67e-01 | 84.1% | 92.5% |
| 1oypA01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.54 | 45.0 | 3.24e-01 | 98.4% | 69.6% |
| 1i6uA01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.52 | 43.0 | 4.24e-01 | 95.2% | 100.0% |
| 3hkmB00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.52 | 45.0 | 3.16e-01 | 100.0% | 99.5% |
| 3bbaA00 | 3.90.70.50 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) | 0.51 | 37.0 | 2.53e-01 | 96.8% | 20.3% |
| 3qqnA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 44.0 | 3.63e-01 | 98.4% | 60.3% |
| 3te6A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.50 | 38.0 | 3.16e-01 | 82.5% | 53.6% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2714493 | 304.55.1.1 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Gemini_AL1 | 0.69 | 55.0 | 4.58e-01 | 90.5% | 87.1% |
| 4461334 | 304.150.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA | 0.68 | 56.0 | 5.00e-01 | 92.1% | 92.2% |
| 3652139 | 3351.1.1.1 ↗ | a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N | 0.67 | 51.0 | 3.94e-01 | 82.5% | 39.3% |
| 3312053 | 708.1.1.8 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 | 0.62 | 54.0 | 4.50e-01 | 93.7% | 93.3% |
| 3418716 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.61 | 57.0 | 4.79e-01 | 100.0% | 98.0% |
| 3663850 | 708.1.1.8 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FAR1 | 0.61 | 56.0 | 4.82e-01 | 100.0% | 90.5% |
| 3788749 | 6109.1.1.0 ↗ | a+b two layers › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 | 0.58 | 47.0 | 3.77e-01 | 98.4% | 56.0% |
| 3188286 | 2011.1.1.21 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Gaa1 | 0.58 | 42.0 | 2.72e-01 | 81.0% | 36.2% |
| 3225664 | 2011.1.1.21 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Gaa1 | 0.58 | 39.0 | 2.54e-01 | 71.4% | 41.5% |
| 4516260 | 2492.1.1.19 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › STIL_N | 0.56 | 44.0 | 3.59e-01 | 88.9% | 78.5% |
| 5048308 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.55 | 48.0 | 3.31e-01 | 100.0% | 98.2% |
| 3824515 | 327.11.2.11 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1_3 | 0.55 | 38.0 | 3.36e-01 | 74.6% | 81.0% |
| 4259798 | 4020.1.1.0 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes | 0.53 | 38.0 | 2.86e-01 | 76.2% | 58.2% |
| 3958076 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 46.0 | 2.99e-01 | 100.0% | 29.6% |
| 3623972 | 2011.1.1.21 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Gaa1 | 0.53 | 37.0 | 2.48e-01 | 76.2% | 38.4% |
| 3717573 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.52 | 41.0 | 2.53e-01 | 88.9% | 28.7% |
| 3440200 | 210.1.3.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases | 0.51 | 44.0 | 3.30e-01 | 100.0% | 39.6% |
| 4059718 | 2011.1.1.21 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Gaa1 | 0.50 | 38.0 | 2.47e-01 | 84.1% | 39.7% |
| 3209234 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.50 | 36.0 | 3.80e-01 | 98.4% | 90.9% |
| 1114935 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.50 | 42.0 | 2.72e-01 | 98.4% | 68.6% |