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04302015_21_scaffold_6_prodigal-single.1__X__X__00152
Bact-Vir04302015_21_scaffold_6_prodigal-single.1__X__X__00152
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-72
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.70 | 43.0 | 3.89e-01 | 100.0% | 47.3% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 44.0 | 4.29e-01 | 95.7% | 62.0% |
| 6al9B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.66 | 40.0 | 3.68e-01 | 97.1% | 47.3% |
| 3eslA01 | 1.20.58.2070 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 37.0 | 3.61e-01 | 70.0% | 52.0% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.61 | 39.0 | 3.80e-01 | 71.4% | 59.7% |
| 6tqfA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.61 | 54.0 | 3.35e-01 | 100.0% | 17.6% |
| 5svlA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.60 | 43.0 | 4.44e-01 | 91.4% | 77.9% |
| 7craA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 47.0 | 4.36e-01 | 88.6% | 90.2% |
| 4lvpA00 | 1.10.418.70 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Intraflagellar transport protein 81, N-terminal domain | 0.59 | 49.0 | 4.23e-01 | 100.0% | 91.1% |
| 1jwnA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 48.0 | 3.79e-01 | 91.4% | 44.1% |
| 2uuzB00 | 1.10.10.2020 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Host-nuclease inhibitor protein Gam | 0.57 | 52.0 | 4.88e-01 | 100.0% | 85.9% |
| 1r6bX03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 40.0 | 3.79e-01 | 97.1% | 60.2% |
| 2lnmA00 | 1.10.260.100 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › | 0.57 | 29.0 | 3.04e-01 | 81.4% | 50.0% |
| 1owaA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 40.0 | 3.48e-01 | 75.7% | 89.6% |
| 3nkhA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.55 | 37.0 | 2.66e-01 | 70.0% | 70.6% |
| 1mswD04 | 1.10.287.280 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 36.0 | 3.51e-01 | 71.4% | 60.3% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.54 | 39.0 | 3.74e-01 | 88.6% | 65.4% |
| 1wolA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 38.0 | 3.27e-01 | 80.0% | 96.7% |
| 5cqgA03 | 1.10.10.2210 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 37.0 | 3.61e-01 | 84.3% | 69.6% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3595261 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.71 | 48.0 | 4.42e-01 | 70.0% | 78.9% |
| 4025614 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.67 | 60.0 | 4.38e-01 | 100.0% | 94.1% |
| 4394019 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.67 | 49.0 | 4.02e-01 | 100.0% | 42.3% |
| 3880276 | 174.1.1.34 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › FAM70 | 0.66 | 48.0 | 3.54e-01 | 77.1% | 47.0% |
| 4958960 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.60 | 49.0 | 3.63e-01 | 90.0% | 82.7% |
| 4800170 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.59 | 44.0 | 3.86e-01 | 80.0% | 66.7% |
| 3928001 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.58 | 39.0 | 4.09e-01 | 85.7% | 75.4% |
| 3238550 | 3939.1.1.161 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › Mitofilin | 0.58 | 42.0 | 3.20e-01 | 75.7% | 92.3% |
| 3880840 | 375.1.1.246 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rad50_zn_hook | 0.58 | 38.0 | 3.36e-01 | 80.0% | 46.0% |
| 3676029 | 4958.1.1.1 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 0.53 | 38.0 | 2.64e-01 | 77.1% | 41.9% |
| 3735906 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 47.0 | 3.26e-01 | 100.0% | 59.6% |
| 3913484 | 150.3.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine | 0.53 | 41.0 | 3.07e-01 | 84.3% | 35.6% |
| 3587592 | 5067.1.1.6 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › YibE_F | 0.51 | 45.0 | 3.18e-01 | 100.0% | 37.7% |
| 4350211 | 192.29.1.161 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › FlbT | 0.51 | 37.0 | 3.63e-01 | 80.0% | 96.2% |
D2
high
residues 78-170
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00206__D83-187
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7rb4A01 | 3.90.175.10 | Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 | 0.72 | 66.0 | 5.08e-01 | 100.0% | 89.2% |
| 4eyyQ02 | 3.20.170.50 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Dot/Icm secretion system IcmQ, C-terminal domain | 0.69 | 62.0 | 5.78e-01 | 98.9% | 86.0% |
| 2x5yA00 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.68 | 62.0 | 5.05e-01 | 100.0% | 64.9% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.67 | 30.0 | 3.73e-01 | 100.0% | 66.7% |
| 1tj6A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 27.0 | 2.54e-01 | 100.0% | 33.9% |
| 2yvsA02 | 3.30.70.2560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 29.0 | 3.49e-01 | 92.5% | 84.7% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3463182 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.72 | 66.0 | 5.08e-01 | 100.0% | 52.0% |
| 3176205 | 237.1.1.37 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PF27671 | 0.64 | 59.0 | 4.33e-01 | 100.0% | 58.7% |