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04302015_21_scaffold_6_prodigal-single.1__X__X__00204
Bact-Vir04302015_21_scaffold_6_prodigal-single.1__X__X__00204
Identity
- Kingdom:
- phage
Quality
69.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-72_96-160
Domain cluster:
rep: JGI24723J26617_10000007_prodigal-single.1__X__X__00027__D13-146
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yqeA02 | 3.40.50.10700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › AF0625-like | 0.67 | 32.0 | 3.77e-01 | 96.3% | 63.5% |
| 4kq9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 29.0 | 2.55e-01 | 94.1% | 29.0% |
| 2b99C00 | 3.40.50.960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase | 0.63 | 33.0 | 3.25e-01 | 99.3% | 46.1% |
| 2hy1A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.62 | 37.0 | 3.11e-01 | 100.0% | 35.2% |
| 2zauA01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.61 | 35.0 | 3.62e-01 | 96.3% | 58.7% |
| 3wxmB03 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.60 | 32.0 | 3.56e-01 | 97.1% | 64.5% |
| 1yawB01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.56 | 34.0 | 3.45e-01 | 97.1% | 59.7% |
| 3i8oA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.52 | 31.0 | 3.25e-01 | 99.3% | 61.7% |
| 4s1pA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 38.0 | 3.44e-01 | 100.0% | 57.6% |
| 1nmnA00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.51 | 34.0 | 3.62e-01 | 97.1% | 76.7% |
| 3milB00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.50 | 38.0 | 3.14e-01 | 100.0% | 45.4% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5025733 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.61 | 31.0 | 3.79e-01 | 93.4% | 76.5% |
| 117475 | 2486.1.1.3 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans | 0.59 | 39.0 | 3.89e-01 | 100.0% | 63.6% |
| 4983512 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.57 | 34.0 | 3.42e-01 | 97.1% | 57.1% |
| 4956954 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.56 | 34.0 | 3.39e-01 | 97.1% | 57.1% |
| 4541612 | 2004.1.1.514 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B | 0.55 | 39.0 | 2.76e-01 | 72.8% | 54.3% |
| 3999097 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 33.0 | 3.08e-01 | 93.4% | 47.4% |
| 3967251 | 2004.1.1.514 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B | 0.55 | 39.0 | 2.54e-01 | 72.8% | 69.5% |
| 5031232 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.54 | 33.0 | 3.32e-01 | 94.9% | 57.9% |
| 4135511 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.53 | 36.0 | 4.03e-01 | 97.1% | 88.6% |
| 5040706 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.52 | 32.0 | 3.17e-01 | 97.1% | 57.9% |
| 3278616 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 40.0 | 4.18e-01 | 98.5% | 88.0% |
| 4033726 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.51 | 36.0 | 3.04e-01 | 72.1% | 67.7% |
| 3280772 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.50 | 36.0 | 3.87e-01 | 96.3% | 87.0% |
| 4129265 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.50 | 28.0 | 2.92e-01 | 94.9% | 54.6% |
D2
high
residues 195-270_295-373
Domain cluster:
rep: JGI24723J26617_10000007_prodigal-single.1__X__X__00027__D13-146