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04302015_21_scaffold_6_prodigal-single.1__X__X__00225
Bact-Vir04302015_21_scaffold_6_prodigal-single.1__X__X__00225
Identity
- Kingdom:
- phage
Quality
86.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-71
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j30A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.92 | 69.0 | 5.27e-01 | 79.7% | 38.3% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.90 | 69.0 | 6.33e-01 | 79.7% | 76.7% |
| 1rq0A01 | 6.10.140.160 | Special › Helix non-globular › Helix Hairpins › | 0.86 | 73.0 | 6.80e-01 | 91.3% | 74.7% |
| 5z7qA00 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.85 | 69.0 | 4.97e-01 | 85.5% | 80.1% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.85 | 58.0 | 6.17e-01 | 79.7% | 80.3% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.83 | 61.0 | 5.42e-01 | 79.7% | 55.1% |
| 2p0vA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.83 | 57.0 | 3.40e-01 | 71.0% | 11.4% |
| 3t9oB00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.82 | 61.0 | 5.01e-01 | 78.3% | 45.0% |
| 3g67A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.81 | 69.0 | 4.73e-01 | 89.9% | 30.0% |
| 3owaB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.81 | 63.0 | 4.73e-01 | 82.6% | 36.9% |
| 2lm9A00 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 60.0 | 5.36e-01 | 85.5% | 57.3% |
| 1xzpA02 | 1.20.120.430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 | 0.78 | 63.0 | 4.58e-01 | 84.1% | 80.1% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 60.0 | 5.94e-01 | 82.6% | 81.9% |
| 1h7cA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 64.0 | 5.59e-01 | 89.9% | 60.2% |
| 3kp9A01 | 1.20.1440.130 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain | 0.78 | 57.0 | 4.27e-01 | 76.8% | 33.3% |
| 2x1lA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.78 | 53.0 | 3.91e-01 | 71.0% | 37.8% |
| 2i0mA02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.77 | 58.0 | 5.08e-01 | 79.7% | 54.5% |
| 1qgtB00 | 1.10.4090.10 | Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus | 0.77 | 53.0 | 4.15e-01 | 87.0% | 35.0% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.76 | 60.0 | 5.05e-01 | 84.1% | 57.1% |
| 5ohzA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.76 | 59.0 | 3.50e-01 | 81.2% | 25.1% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.76 | 52.0 | 4.85e-01 | 75.4% | 57.6% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.75 | 55.0 | 4.66e-01 | 84.1% | 46.2% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.74 | 55.0 | 4.45e-01 | 78.3% | 76.2% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.72 | 60.0 | 5.10e-01 | 89.9% | 58.7% |
| 1kf6C00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.71 | 54.0 | 4.39e-01 | 81.2% | 48.5% |
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.71 | 53.0 | 4.29e-01 | 98.6% | 40.4% |
| 3na7A00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 60.0 | 4.19e-01 | 100.0% | 31.2% |
| 2ewfA02 | 1.20.1270.310 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.69 | 49.0 | 4.62e-01 | 75.4% | 63.0% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.69 | 56.0 | 4.87e-01 | 91.3% | 58.7% |
| 4d3dB02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.66 | 51.0 | 4.12e-01 | 82.6% | 98.4% |
| 1hw1A02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.63 | 48.0 | 3.72e-01 | 81.2% | 84.8% |
| 1c17M00 | 1.20.120.220 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ATP synthase, F0 complex, subunit A | 0.57 | 50.0 | 3.97e-01 | 98.6% | 84.5% |
| 1l1lA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.55 | 40.0 | 2.38e-01 | 76.8% | 69.3% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5014742 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.95 | 71.0 | 5.20e-01 | 76.8% | 34.2% |
| 3929364 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.93 | 69.0 | 5.47e-01 | 79.7% | 42.4% |
| 4386543 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.92 | 73.0 | 4.75e-01 | 84.1% | 22.4% |
| 3705783 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.92 | 74.0 | 6.68e-01 | 84.1% | 64.4% |
| 3718408 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.92 | 74.0 | 6.18e-01 | 84.1% | 52.7% |
| 3603648 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.91 | 66.0 | 6.03e-01 | 79.7% | 59.1% |
| 3225319 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.91 | 66.0 | 5.43e-01 | 75.4% | 46.1% |
| 3687353 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.91 | 73.0 | 5.12e-01 | 85.5% | 30.5% |
| 3928077 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.91 | 72.0 | 5.44e-01 | 84.1% | 39.3% |
| 3359325 | 4207.1.2.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region | 0.90 | 62.0 | 4.95e-01 | 75.4% | 39.2% |
| 3403179 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.90 | 74.0 | 6.31e-01 | 87.0% | 57.1% |
| 4959927 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.90 | 70.0 | 5.08e-01 | 81.2% | 32.9% |
| 3605626 | 192.12.1.0 ↗ | alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM | 0.90 | 73.0 | 6.15e-01 | 84.1% | 55.2% |
| 4026926 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.90 | 76.0 | 5.94e-01 | 91.3% | 45.9% |
| 3738569 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.90 | 73.0 | 6.21e-01 | 85.5% | 56.2% |
| 3390311 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.90 | 74.0 | 6.21e-01 | 89.9% | 54.5% |
| 3392286 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.90 | 77.0 | 6.45e-01 | 91.3% | 57.3% |
| 3783023 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.88 | 63.0 | 5.34e-01 | 78.3% | 48.6% |
| 5063778 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.88 | 79.0 | 4.65e-01 | 100.0% | 14.7% |
| 3073109 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.88 | 70.0 | 6.81e-01 | 85.5% | 78.4% |
| 4505320 | 601.4.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TarH | 0.87 | 81.0 | 5.84e-01 | 100.0% | 39.4% |
| 3423402 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.87 | 73.0 | 6.80e-01 | 95.7% | 74.1% |
| 3399433 | 3826.1.1.39 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › WHEP-TRS | 0.85 | 57.0 | 5.74e-01 | 71.0% | 68.6% |
| 3932692 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.85 | 64.0 | 5.76e-01 | 84.1% | 60.0% |
| 3483587 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.85 | 76.0 | 5.13e-01 | 98.6% | 52.9% |
| 3482273 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.84 | 73.0 | 6.22e-01 | 97.1% | 59.6% |
| 5082516 | 5069.1.1.4 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct | 0.84 | 62.0 | 4.68e-01 | 76.8% | 35.3% |
| 3976632 | 3291.1.1.4 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 | 0.83 | 77.0 | 5.84e-01 | 100.0% | 46.7% |
| 3435096 | 192.29.1.216 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF632 | 0.83 | 71.0 | 5.84e-01 | 94.2% | 53.3% |
| 3256502 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.83 | 76.0 | 5.16e-01 | 100.0% | 30.0% |
| 4962781 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.82 | 69.0 | 6.71e-01 | 89.9% | 84.0% |
| 3903553 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.81 | 56.0 | 4.64e-01 | 71.0% | 43.5% |
| 5029873 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.81 | 55.0 | 5.26e-01 | 72.5% | 61.3% |
| 4952876 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.81 | 60.0 | 5.52e-01 | 82.6% | 61.1% |
| 3628260 | 11.2.1.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › Anillin | 0.81 | 71.0 | 4.87e-01 | 95.7% | 29.3% |
| 3996599 | 4177.2.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › Inhibitor of kappaB kinase beta dimerization domain › Inhibitor of kappaB kinase beta dimerization domain | 0.80 | 71.0 | 4.75e-01 | 98.6% | 52.7% |
| 3677905 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.80 | 74.0 | 4.54e-01 | 100.0% | 42.2% |
| 3953703 | 601.33.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD | 0.80 | 69.0 | 5.42e-01 | 92.8% | 80.5% |
| 3560229 | 3291.1.1.230 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › TBCA_PH | 0.79 | 59.0 | 4.67e-01 | 79.7% | 72.1% |
| 4359654 | 605.2.1.3 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N | 0.79 | 72.0 | 6.04e-01 | 98.6% | 62.7% |
| 3784055 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.79 | 70.0 | 5.59e-01 | 97.1% | 53.1% |
| 3505878 | 4177.1.1.10 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › GMIP-like_FCH | 0.78 | 69.0 | 4.48e-01 | 97.1% | 58.0% |
| 3461533 | 3755.3.1.610 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › UPF0114 | 0.78 | 69.0 | 5.67e-01 | 100.0% | 60.8% |
| 4175087 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.78 | 70.0 | 5.91e-01 | 98.6% | 62.7% |
| 3339157 | 3755.3.1.370 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF632 | 0.77 | 68.0 | 5.77e-01 | 100.0% | 60.0% |
| 3951780 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.76 | 62.0 | 3.78e-01 | 88.4% | 16.9% |
| 3977161 | 605.1.1.332 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › FxsA | 0.75 | 57.0 | 4.89e-01 | 85.5% | 51.8% |
| 4273807 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.74 | 67.0 | 4.04e-01 | 98.6% | 16.4% |
| 4119449 | 109.4.1.1151 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HIR3_helical | 0.72 | 55.0 | 3.62e-01 | 81.2% | 32.6% |
| 4542879 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.72 | 56.0 | 4.40e-01 | 88.4% | 40.0% |
| 3340833 | 5086.1.1.109 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Chloroplast_duf | 0.71 | 53.0 | 4.89e-01 | 79.7% | 70.0% |
| 4109644 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.70 | 53.0 | 4.20e-01 | 82.6% | 39.3% |
| 4013499 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.69 | 51.0 | 3.86e-01 | 82.6% | 33.1% |
| 4987684 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.69 | 60.0 | 4.91e-01 | 100.0% | 52.3% |
| 5070736 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.68 | 55.0 | 4.07e-01 | 94.2% | 37.5% |
| 4985493 | 3834.1.1.0 ↗ | alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain | 0.66 | 55.0 | 3.74e-01 | 91.3% | 60.0% |