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04302015_21_scaffold_6_prodigal-single.1__X__X__00252
Bact-Vir04302015_21_scaffold_6_prodigal-single.1__X__X__00252
Identity
- Kingdom:
- phage
Quality
46.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 136-214
Domain cluster:
rep: 04302015_21_scaffold_10_prodigal-single.1__X__X__00108__D99-174
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.73 | 49.0 | 5.23e-01 | 73.4% | 79.7% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.73 | 51.0 | 5.24e-01 | 72.2% | 77.0% |
| 2ebbA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.71 | 51.0 | 4.79e-01 | 75.9% | 79.2% |
| 4mo0A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.69 | 50.0 | 5.06e-01 | 77.2% | 83.5% |
| 4kr6A01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.67 | 48.0 | 3.74e-01 | 74.7% | 98.2% |
| 2cqhA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 47.0 | 4.49e-01 | 74.7% | 76.3% |
| 1lxjA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 45.0 | 4.20e-01 | 72.2% | 68.0% |
| 4hkqA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.66 | 54.0 | 4.42e-01 | 89.9% | 60.4% |
| 3dgpA00 | 3.30.70.2610 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 47.0 | 5.14e-01 | 98.7% | 98.4% |
| 1x60A01 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.64 | 44.0 | 4.57e-01 | 70.9% | 91.7% |
| 1bqnA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.64 | 53.0 | 5.00e-01 | 91.1% | 84.0% |
| 2cw8A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.63 | 46.0 | 3.60e-01 | 77.2% | 53.3% |
| 1s7hA01 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 43.0 | 4.32e-01 | 72.2% | 87.5% |
| 3mcqA02 | 3.90.650.10 | Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain | 0.56 | 42.0 | 3.40e-01 | 83.5% | 85.7% |
| 2fmyA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 3.73e-01 | 72.2% | 75.6% |
| 3m4xA01 | 3.30.70.1170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 | 0.54 | 35.0 | 3.48e-01 | 72.2% | 60.2% |
| 6k2eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 35.0 | 3.68e-01 | 72.2% | 82.4% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929591 | 306.3.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 | 0.73 | 54.0 | 5.19e-01 | 77.2% | 73.0% |
| 3258420 | 4340.1.1.2 ↗ | a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb2_C | 0.73 | 48.0 | 5.58e-01 | 70.9% | 98.2% |
| 5293 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.73 | 48.0 | 5.15e-01 | 70.9% | 79.4% |
| 5054667 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.72 | 54.0 | 5.23e-01 | 79.7% | 71.1% |
| 4153537 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.71 | 49.0 | 4.90e-01 | 77.2% | 70.0% |
| 4576277 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.70 | 48.0 | 5.01e-01 | 77.2% | 80.0% |
| 5069719 | 306.3.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 | 0.70 | 51.0 | 5.02e-01 | 77.2% | 75.3% |
| 2320836 | 4340.1.1.1 ↗ | a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb5 | 0.70 | 48.0 | 5.20e-01 | 74.7% | 86.4% |
| 4174001 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.70 | 47.0 | 5.04e-01 | 70.9% | 84.6% |
| 5031343 | 3715.1.1.0 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e | 0.69 | 48.0 | 4.64e-01 | 72.2% | 83.3% |
| 3862939 | 327.11.2.53 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27824 | 0.69 | 48.0 | 4.66e-01 | 73.4% | 66.7% |
| 5076080 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.67 | 48.0 | 4.81e-01 | 74.7% | 82.5% |
| 4953268 | 327.11.2.83 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DUF2096_C | 0.67 | 48.0 | 5.19e-01 | 79.7% | 92.3% |
| 3934231 | 4340.1.1.2 ↗ | a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb2_C | 0.67 | 47.0 | 5.16e-01 | 73.4% | 96.7% |
| 4102464 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.67 | 46.0 | 4.71e-01 | 70.9% | 98.7% |
| 4948443 | 304.8.1.10 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 | 0.66 | 57.0 | 4.67e-01 | 97.5% | 84.0% |
| 2671275 | 4340.1.1.1 ↗ | a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb5 | 0.65 | 44.0 | 4.69e-01 | 70.9% | 83.3% |
| 4773815 | 4340.1.1.2 ↗ | a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb2_C | 0.65 | 47.0 | 5.14e-01 | 98.7% | 98.4% |
| 4028494 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.65 | 47.0 | 4.29e-01 | 77.2% | 72.4% |
| 3964771 | 327.11.2.48 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › DUF7168 | 0.64 | 47.0 | 4.09e-01 | 77.2% | 54.6% |
| 5047872 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.64 | 46.0 | 5.00e-01 | 77.2% | 93.8% |
| 4075173 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.63 | 44.0 | 3.99e-01 | 77.2% | 52.7% |
| 5082594 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 42.0 | 4.46e-01 | 73.4% | 92.9% |
| 3974015 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.60 | 41.0 | 4.28e-01 | 70.9% | 85.7% |
| 164037 | 4340.1.1.1 ↗ | a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb5 | 0.60 | 44.0 | 4.50e-01 | 93.7% | 85.1% |
| 3704313 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.59 | 47.0 | 4.15e-01 | 89.9% | 88.8% |
| 2117204 | 4340.1.1.2 ↗ | a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb2_C | 0.59 | 46.0 | 4.64e-01 | 98.7% | 85.2% |
| 3287739 | 304.48.1.48 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 | 0.59 | 45.0 | 3.76e-01 | 87.3% | 86.5% |
| 3775881 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.59 | 40.0 | 4.06e-01 | 72.2% | 78.8% |
| 3723946 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.58 | 47.0 | 3.55e-01 | 89.9% | 45.5% |
| 4987371 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 41.0 | 3.63e-01 | 81.0% | 100.0% |
| 1942459 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.54 | 38.0 | 4.11e-01 | 74.7% | 93.8% |