←Back to structures
04302015_21_scaffold_6_prodigal-single.1__X__X__00276
Bact-Vir04302015_21_scaffold_6_prodigal-single.1__X__X__00276
Identity
- Kingdom:
- phage
Quality
58.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 54-122
D2
medium
residues 123-176
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.70 | 56.0 | 5.55e-01 | 90.7% | 98.3% |
| 7kypE01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 48.0 | 3.26e-01 | 87.0% | 30.9% |
| 2nq2D00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 49.0 | 3.20e-01 | 90.7% | 27.0% |
| 4yzgA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.60 | 53.0 | 3.33e-01 | 100.0% | 50.7% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.59 | 47.0 | 4.69e-01 | 98.1% | 93.0% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.57 | 38.0 | 3.84e-01 | 70.4% | 85.5% |
| 4ne4A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 43.0 | 3.12e-01 | 87.0% | 91.0% |
| 6nkoC00 | 3.40.50.1380 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylglyoxal synthase-like domain | 0.54 | 44.0 | 3.17e-01 | 100.0% | 81.1% |
| 2yn7A00 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.54 | 43.0 | 3.05e-01 | 100.0% | 67.3% |
| 4z7eA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 43.0 | 3.13e-01 | 94.4% | 93.4% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.53 | 44.0 | 4.36e-01 | 98.1% | 93.2% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 37.0 | 3.53e-01 | 94.4% | 64.2% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3632015 | 103.1.1.112 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DUF7071 | 0.68 | 59.0 | 5.50e-01 | 100.0% | 82.4% |
| 3963295 | 148.1.3.238 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF815 | 0.67 | 55.0 | 5.51e-01 | 92.6% | 96.4% |
| 4585171 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.64 | 51.0 | 5.12e-01 | 90.7% | 94.5% |
| 3278934 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.64 | 53.0 | 5.16e-01 | 92.6% | 98.3% |
| 3966804 | 148.1.3.238 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF815 | 0.64 | 55.0 | 5.33e-01 | 98.1% | 100.0% |
| 5004101 | 2005.1.1.16 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Diphthami_syn_2 | 0.61 | 48.0 | 3.15e-01 | 87.0% | 37.0% |
| 4319059 | 103.5.1.2 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm | 0.60 | 44.0 | 4.27e-01 | 90.7% | 71.4% |
| 3840526 | 103.1.1.24 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › BIRC2-3-like_UBA | 0.58 | 47.0 | 4.38e-01 | 100.0% | 72.0% |
| 4119203 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.58 | 46.0 | 3.15e-01 | 94.4% | 96.0% |
| 4025457 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.58 | 48.0 | 4.27e-01 | 100.0% | 81.2% |
| 4665947 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.57 | 43.0 | 4.29e-01 | 90.7% | 81.0% |
| 5070806 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.55 | 44.0 | 4.20e-01 | 90.7% | 87.7% |
| 3580198 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.53 | 42.0 | 3.00e-01 | 88.9% | 58.9% |
| 5015721 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.51 | 37.0 | 2.42e-01 | 79.6% | 25.7% |
| 4024568 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.51 | 40.0 | 2.67e-01 | 92.6% | 48.5% |
| 3439666 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.50 | 37.0 | 3.04e-01 | 83.3% | 82.7% |