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046L
Euk-VirCherax_quadricarinatus_iridovirus
046L__YP_009552327__Cherax_quadricarinatus_iridovirus__2035708
Identity
- Accession:
- YP_009552327 ↗
- Protein ID:
- 046L
- Kingdom:
- euk
Quality
68.4
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Iridoviridae›
Decapodiridovirus›
Cherax_quadricarinatus_iridovirus
TaxID: 2035708
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 72-118
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l0oA01 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.88 | 74.0 | 7.34e-01 | 100.0% | 87.8% |
| 2kvdA02 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.72 | 60.0 | 5.64e-01 | 100.0% | 75.9% |
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.68 | 56.0 | 5.46e-01 | 100.0% | 85.5% |
| 4b43A01 | 1.10.10.2480 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 47.0 | 4.20e-01 | 93.6% | 55.9% |
| 5cqfA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.63 | 51.0 | 3.07e-01 | 100.0% | 15.8% |
| 1h99A01 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.63 | 47.0 | 3.74e-01 | 85.1% | 50.0% |
| 3hl0A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.62 | 45.0 | 3.04e-01 | 100.0% | 19.9% |
| 2lfhA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.60 | 52.0 | 4.66e-01 | 100.0% | 75.0% |
| 4v19K02 | 1.10.10.250 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain | 0.57 | 43.0 | 3.74e-01 | 100.0% | 52.0% |
| 1gu2A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.56 | 49.0 | 3.58e-01 | 97.9% | 91.9% |
| 1m3qA02 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.54 | 42.0 | 3.67e-01 | 93.6% | 55.0% |
| 2v4jA01 | 6.10.140.1420 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 41.0 | 3.79e-01 | 87.2% | 95.2% |
| 2vvwA00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.51 | 41.0 | 3.02e-01 | 97.9% | 76.7% |
| 3t0yA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 37.0 | 3.50e-01 | 87.2% | 68.2% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3611122 | 130.1.1.32 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) | 0.91 | 79.0 | 7.48e-01 | 100.0% | 80.0% |
| 3943133 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.91 | 75.0 | 7.71e-01 | 95.7% | 93.3% |
| 4428371 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.89 | 77.0 | 7.88e-01 | 100.0% | 97.8% |
| 4260463 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.89 | 73.0 | 7.48e-01 | 95.7% | 93.3% |
| 3568558 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.87 | 73.0 | 6.66e-01 | 100.0% | 71.7% |
| 3881311 | 130.1.1.32 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) | 0.86 | 74.0 | 7.54e-01 | 97.9% | 97.8% |
| 3724166 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.85 | 72.0 | 6.45e-01 | 100.0% | 67.7% |
| 3797432 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.84 | 68.0 | 6.55e-01 | 100.0% | 79.2% |
| 3881355 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.83 | 72.0 | 7.06e-01 | 100.0% | 90.0% |
| 3172891 | 130.1.1.16 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 | 0.81 | 67.0 | 6.62e-01 | 100.0% | 88.0% |
| 3690457 | 130.1.1.16 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 | 0.77 | 61.0 | 5.77e-01 | 100.0% | 73.3% |
| 3353640 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.76 | 67.0 | 5.89e-01 | 100.0% | 68.6% |
| 3198528 | 130.1.1.16 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 | 0.76 | 61.0 | 5.89e-01 | 100.0% | 80.0% |
| 3699757 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.76 | 65.0 | 5.77e-01 | 100.0% | 84.3% |
| 3252664 | 130.1.1.31 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd | 0.75 | 66.0 | 6.29e-01 | 100.0% | 85.5% |
| 3480954 | 130.1.1.2 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM | 0.74 | 62.0 | 6.34e-01 | 100.0% | 100.0% |
| 3916320 | 3773.1.1.1 ↗ | few secondary structure elements › E3 ligase HOIP C-terminal domain › E3 ligase HOIP C-terminal domain › E3 ligase HOIP C-terminal domain › E3_UbLigase_RBR | 0.71 | 60.0 | 4.64e-01 | 97.9% | 43.6% |
| 3127 | 130.1.1.7 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Endonuc-dimeris | 0.68 | 56.0 | 5.49e-01 | 100.0% | 87.0% |
| 3677227 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.65 | 48.0 | 4.34e-01 | 100.0% | 58.5% |
| 3569539 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 52.0 | 3.44e-01 | 95.7% | 47.2% |
| 3955872 | 101.1.2.567 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF222 | 0.59 | 45.0 | 3.27e-01 | 87.2% | 53.3% |
| 3719456 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.56 | 48.0 | 3.20e-01 | 100.0% | 86.3% |
| 3397630 | 148.1.3.190 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF4770 | 0.53 | 44.0 | 3.63e-01 | 97.9% | 82.1% |
| 3728517 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.53 | 41.0 | 2.93e-01 | 87.2% | 41.3% |
D2
medium
residues 126-169
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.72 | 57.0 | 5.37e-01 | 100.0% | 72.7% |
| 2dk4A00 | 4.10.280.110 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Pre-mRNA processing factor 4 domain | 0.64 | 48.0 | 4.21e-01 | 93.2% | 51.3% |
| 4qozB02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.59 | 50.0 | 3.21e-01 | 100.0% | 78.4% |
| 4p55B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 46.0 | 3.67e-01 | 93.2% | 70.8% |
| 4ccsA02 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 39.0 | 2.93e-01 | 79.5% | 84.4% |
| 3bkhA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.54 | 44.0 | 3.05e-01 | 100.0% | 27.5% |
| 4fz2A01 | 3.40.1170.20 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain | 0.54 | 37.0 | 3.28e-01 | 75.0% | 57.3% |
| 2w4sA00 | 1.10.10.1440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain | 0.53 | 45.0 | 3.66e-01 | 97.7% | 57.0% |
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 37.0 | 2.48e-01 | 79.5% | 40.0% |
| 3uc9A00 | 3.40.50.11960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 41.0 | 2.81e-01 | 95.5% | 45.6% |
| 2hwjA01 | 3.90.1530.10 | Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain | 0.50 | 36.0 | 2.88e-01 | 93.2% | 84.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5001086 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.62 | 44.0 | 2.96e-01 | 79.5% | 41.5% |
| 5027764 | 152.1.1.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 | 0.62 | 45.0 | 3.89e-01 | 100.0% | 48.0% |
| 4027085 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.62 | 49.0 | 4.44e-01 | 100.0% | 65.1% |
| 5026659 | 1085.1.1.1 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 › DHH_CID | 0.61 | 49.0 | 4.05e-01 | 97.7% | 72.2% |
| 3903445 | 2004.1.1.81 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GBP | 0.61 | 42.0 | 2.56e-01 | 70.5% | 58.7% |
| 4945821 | 1085.1.1.0 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 | 0.59 | 50.0 | 4.05e-01 | 100.0% | 71.1% |
| 3727111 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.57 | 45.0 | 4.02e-01 | 93.2% | 71.4% |
| 4935756 | 242.2.1.0 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like | 0.57 | 42.0 | 3.96e-01 | 79.5% | 96.4% |
| 1879413 | 152.1.1.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 | 0.57 | 40.0 | 3.41e-01 | 95.5% | 41.9% |
| 2876157 | 101.1.9.105 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 | 0.56 | 48.0 | 4.61e-01 | 100.0% | 83.0% |
| 4945882 | 242.2.1.0 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like | 0.56 | 41.0 | 3.58e-01 | 79.5% | 97.1% |
| 5029055 | 2.1.1.134 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › GIDE | 0.56 | 43.0 | 2.98e-01 | 86.4% | 40.6% |
| 4405976 | 1180.1.1.1 ↗ | alpha bundles › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › FliP | 0.56 | 47.0 | 3.19e-01 | 93.2% | 74.8% |
| 3716326 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 49.0 | 4.19e-01 | 100.0% | 84.3% |
| 1175858 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.54 | 44.0 | 3.02e-01 | 100.0% | 26.5% |