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065L

Euk-Vir

Cherax_quadricarinatus_iridovirus

065L__YP_009552346__Cherax_quadricarinatus_iridovirus__2035708

Identity

Accession:
YP_009552346 ↗
Protein ID:
065L
Kingdom:
euk

Quality

74.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Decapodiridovirus› Cherax_quadricarinatus_iridovirus

TaxID: 2035708

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-111
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_subunit_RPB5__YP_009310368__Golden_Marseillevirus__1720526__D1-112
D2 high residues 118-172
PDB
Domain cluster: rep: hypothetical_protein_KM759_gp094__YP_010087967__Lymphocystis_disease_virus_4__2704413__D104-154
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dzfA02 3.90.940.20 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.84 75.0 6.83e-01 100.0% 89.0%
5gaeH01 3.10.430.100 Alpha Beta › Roll › Ribosomal Protein L9; domain 2 › Ribosomal protein L9, C-terminal domain 0.60 41.0 3.74e-01 72.7% 92.3%
4k6nA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.60 43.0 3.18e-01 78.2% 94.8%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 37.0 2.68e-01 100.0% 23.5%
2ee3A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 3.36e-01 80.0% 82.4%
2zyqA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 40.0 3.10e-01 78.2% 63.6%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.55 37.0 3.43e-01 100.0% 54.9%
2hxsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 38.0 2.74e-01 74.5% 32.6%
3b59A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 39.0 3.15e-01 80.0% 70.2%
3rheA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 37.0 3.07e-01 81.8% 56.1%
6hhuA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 4.01e-01 100.0% 73.1%
1ryp200 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 44.0 2.93e-01 100.0% 84.5%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4600910 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.88 80.0 7.36e-01 100.0% 95.7%
3824571 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.87 79.0 7.09e-01 100.0% 86.7%
3607644 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.86 78.0 6.99e-01 100.0% 87.8%
4838977 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.85 76.0 6.84e-01 100.0% 85.5%
3596039 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.85 75.0 6.91e-01 98.2% 91.4%
4253107 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.84 74.0 6.78e-01 100.0% 89.0%
4861748 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.83 74.0 6.80e-01 100.0% 91.5%
3033324 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.80 70.0 6.45e-01 100.0% 90.3%
4969987 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.64 56.0 4.06e-01 100.0% 80.0%
3489576 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.60 42.0 3.44e-01 74.5% 97.1%
4973372 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 50.0 3.95e-01 100.0% 69.6%
4981251 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 51.0 3.95e-01 100.0% 64.8%
5043595 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 51.0 4.07e-01 100.0% 67.0%
4982935 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.58 50.0 4.02e-01 100.0% 70.8%
5018370 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.58 49.0 4.02e-01 100.0% 71.8%
4985683 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.57 49.0 4.02e-01 100.0% 74.3%
4403811 241.4.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.55 38.0 2.94e-01 100.0% 33.3%
1758298 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.55 40.0 2.87e-01 100.0% 28.4%
3895610 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 38.0 2.61e-01 100.0% 19.1%
3998546 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 35.0 3.47e-01 100.0% 65.0%
4946746 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.52 44.0 3.63e-01 100.0% 68.2%
3797373 2.1.1.249 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_2nd 0.52 44.0 3.69e-01 94.5% 68.4%