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079L

Euk-Vir

Cherax_quadricarinatus_iridovirus

079L__YP_009552360__Cherax_quadricarinatus_iridovirus__2035708

Identity

Accession:: YP_009552360 ↗
Protein ID:: 079L
Kingdom:: euk

Quality

82.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Decapodiridovirus› Cherax_quadricarinatus_iridovirus

TaxID: 2035708

Cluster

View cluster (37 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-59

PDB

Domain cluster: rep: immediate_early_ICP-46__YP_010084825__Shrimp_hemocyte_iridescent_virus__2039780__D7-58

D2 medium residues 60-87_226-269

PDB

Domain cluster: representative

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5d1oA02	3.30.1490.70	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 ›	0.71	62.0	6.18e-01	95.8%	98.6%
4d05A01	3.30.1490.70	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 ›	0.70	60.0	5.94e-01	97.2%	88.2%
1a0iA01	3.30.1490.70	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 ›	0.69	59.0	5.64e-01	94.4%	88.0%
1x9nA02	3.30.1490.70	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 ›	0.68	60.0	5.77e-01	100.0%	98.8%
1fviA01	3.30.1490.70	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 ›	0.67	56.0	5.48e-01	93.1%	89.9%
4p02B04	3.30.379.30	Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 ›	0.65	55.0	4.16e-01	100.0%	40.9%
1vs0A01	3.30.1490.70	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 ›	0.61	50.0	4.94e-01	95.8%	85.5%
1u7iA02	3.30.720.110	Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 ›	0.59	41.0	4.40e-01	98.6%	88.5%
4m8aA00	3.30.720.210	Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 ›	0.57	36.0	3.79e-01	98.6%	68.7%
4xijA01	3.40.50.10860	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1	0.57	41.0	3.39e-01	75.0%	69.0%
5hftD00	3.60.20.40	Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit	0.56	39.0	3.10e-01	73.6%	48.7%
1z9mA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	48.0	4.29e-01	100.0%	90.4%
2fnjB00	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.54	44.0	4.02e-01	91.7%	80.6%
2gy5A04	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.54	46.0	4.23e-01	100.0%	88.9%
4k28A01	3.40.50.10860	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1	0.52	37.0	3.17e-01	75.0%	74.8%
1we6A00	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.52	40.0	3.53e-01	86.1%	57.7%
2qqrA02	3.10.330.70	Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 ›	0.52	33.0	3.67e-01	94.4%	88.7%
1p77A01	3.40.50.10860	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1	0.51	36.0	2.90e-01	75.0%	59.7%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4970989	211.1.1.0 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	0.58	46.0	4.76e-01	100.0%	100.0%
3947232	11.1.5.102 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PF29737	0.55	45.0	3.61e-01	95.8%	96.9%
4453992	2492.1.1.0 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like	0.54	39.0	3.38e-01	76.4%	50.4%
4016985	221.1.1.178 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Sde2_N_Ubi_yeast	0.52	40.0	3.61e-01	84.7%	76.2%
3560187	5.1.4.45 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_3	0.52	35.0	2.20e-01	95.8%	12.3%
5081301	2484.1.1.13 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T	0.50	44.0	2.77e-01	98.6%	29.5%

D3 medium residues 88-225

PDB

Domain cluster: rep: hypothetical_protein_F8203_gp077__YP_009701543__Heliothis_virescens_ascovirus_3f__328614__D104-230

D4 medium residues 282-404

PDB

Domain cluster: rep: hypothetical_protein_D1R32_gp108__YP_009506870__Tunisvirus_fontaine2__1421067__D281-403

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3deeA01	1.10.150.690	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063	0.72	32.0	3.84e-01	93.5%	60.5%
4htpB00	1.10.3260.10	Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain	0.51	45.0	3.79e-01	100.0%	65.3%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3641979	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.59	37.0	4.08e-01	74.0%	78.0%
3264693	181.1.1.0 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins	0.57	27.0	3.45e-01	91.9%	74.3%
3603633	3997.1.1.1 ↗	alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › CobN-Mg_chel	0.56	45.0	3.88e-01	85.4%	70.0%
4933597	195.1.1.0 ↗	alpha complex topology › NusB-like › NusB-like › NusB-like	0.55	39.0	3.79e-01	97.6%	65.2%
3687745	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.54	32.0	3.24e-01	88.6%	56.0%
3339772	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.53	43.0	4.12e-01	84.6%	91.4%
4945959	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	41.0	3.54e-01	87.8%	100.0%
3237068	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.52	34.0	3.29e-01	72.4%	57.2%
4999064	7000.1.1.1 ↗	alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › HTH_OrfB_IS605	0.51	35.0	4.04e-01	90.2%	96.7%