←Back to structures

088L

Euk-Vir

Cherax_quadricarinatus_iridovirus

088L__YP_009552369__Cherax_quadricarinatus_iridovirus__2035708

Identity

Accession:
YP_009552369 ↗
Protein ID:
088L
Kingdom:
euk

Quality

54.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Decapodiridovirus› Cherax_quadricarinatus_iridovirus

TaxID: 2035708

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 101-163
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8eb0A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.74 65.0 5.88e-01 100.0% 79.1%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 63.0 5.63e-01 100.0% 75.5%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.64 44.0 4.39e-01 76.2% 68.7%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.55 41.0 3.36e-01 84.1% 64.9%
4qfvC02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.53 44.0 4.39e-01 92.1% 96.9%
5b5lA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 44.0 3.15e-01 98.4% 70.5%
4wedA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 42.0 2.92e-01 98.4% 89.8%
1a5eA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.52 38.0 2.94e-01 81.0% 55.8%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.51 36.0 2.63e-01 74.6% 69.6%
3di1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 42.0 2.77e-01 93.7% 39.7%
3l4gC04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 37.0 2.47e-01 81.0% 19.0%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3179970 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.85 78.0 7.03e-01 100.0% 78.8%
3638415 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.84 76.0 6.37e-01 100.0% 78.1%
3332901 376.1.1.12 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING-like 0.80 53.0 5.59e-01 76.2% 78.2%
3816376 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.79 71.0 6.40e-01 100.0% 76.5%
4025222 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 57.0 5.01e-01 81.0% 53.3%
3498231 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 69.0 6.27e-01 100.0% 80.0%
3249848 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.78 70.0 6.31e-01 100.0% 80.0%
3260080 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.77 68.0 6.28e-01 98.4% 85.0%
4019898 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.77 69.0 5.92e-01 100.0% 69.0%
3263160 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.76 68.0 5.72e-01 100.0% 67.6%
3917462 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.75 66.0 5.92e-01 100.0% 81.1%
3995951 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.75 65.0 5.94e-01 98.4% 81.2%
3457383 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.75 66.0 5.91e-01 100.0% 75.6%
3538008 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.75 66.0 5.91e-01 100.0% 81.1%
3420948 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.75 65.0 5.72e-01 100.0% 71.6%
4011583 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.75 66.0 5.80e-01 100.0% 67.4%
3907698 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.75 65.0 6.04e-01 98.4% 83.7%
3906952 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.75 66.0 5.59e-01 100.0% 74.0%
3368659 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.75 65.0 6.02e-01 98.4% 85.0%
3573660 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.74 65.0 5.94e-01 100.0% 82.4%
3928741 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.74 64.0 5.88e-01 100.0% 77.6%
3907480 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.74 64.0 5.74e-01 98.4% 75.6%
3734003 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.74 64.0 5.31e-01 100.0% 71.3%
3250498 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.73 63.0 5.49e-01 100.0% 69.0%
3657469 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.73 63.0 5.50e-01 100.0% 69.0%
3828987 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.73 63.0 5.58e-01 100.0% 72.6%
3806971 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 65.0 5.87e-01 100.0% 75.3%
3723227 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.72 62.0 5.82e-01 100.0% 80.0%
3559289 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 62.0 5.70e-01 100.0% 91.8%
4015661 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 62.0 5.28e-01 100.0% 70.5%
3728775 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 59.0 5.45e-01 96.8% 72.9%
4000274 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.71 61.0 5.59e-01 100.0% 80.0%
3826090 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.71 64.0 5.77e-01 100.0% 75.3%
3438467 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.71 61.0 5.50e-01 100.0% 92.2%
3259913 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 58.0 5.54e-01 100.0% 77.3%
3207641 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 61.0 5.54e-01 100.0% 77.6%
4022391 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 59.0 5.29e-01 96.8% 94.4%
3358136 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.70 59.0 5.51e-01 98.4% 93.8%
3724405 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 59.0 5.49e-01 98.4% 85.0%
4015300 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 60.0 5.49e-01 100.0% 82.4%
3837562 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 58.0 4.95e-01 96.8% 81.9%
3316017 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.68 57.0 5.39e-01 100.0% 95.0%
3822811 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 58.0 5.26e-01 100.0% 80.0%
3684391 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.67 58.0 5.22e-01 100.0% 78.9%
3544350 109.3.1.166 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.60 49.0 3.77e-01 90.5% 65.3%
3829033 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 50.0 4.73e-01 100.0% 82.5%
3884513 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.55 45.0 2.78e-01 95.2% 26.3%
3857036 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.54 44.0 2.80e-01 95.2% 21.3%
3309008 375.1.1.246 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rad50_zn_hook 0.53 33.0 2.87e-01 76.2% 37.1%
4604399 109.4.1.927 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_LIN 0.51 41.0 2.83e-01 93.7% 78.1%
3624433 109.3.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank 0.51 38.0 2.97e-01 88.9% 54.1%
D2 medium residues 409-519
PDB