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100K

Euk-Vir

Turkey_aviadenovirus_4

100K__YP_008719831__Turkey_aviadenovirus_4__1408257

Identity

Accession:: YP_008719831 ↗
Protein ID:: 100K
Kingdom:: euk

Quality

64.7 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› turkey_adenovirus_4

TaxID: 1408257

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-100

PDB

Domain cluster: rep: hexon_assembly_protein_100K__YP_006383567__Goose_adenovirus_4__1193422__D5-84

CATH (32)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2mpcA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.79	59.0	6.20e-01	82.7%	85.6%
2l6aA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.79	61.0	6.01e-01	87.8%	77.5%
4n1kD00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.77	67.0	6.90e-01	99.0%	97.9%
2k3nA00	1.10.274.60	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain	0.69	60.0	5.12e-01	95.9%	77.5%
2dbdA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.67	55.0	5.34e-01	91.8%	81.3%
2lwdA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.66	50.0	5.06e-01	84.7%	82.3%
4irlB02	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.63	47.0	4.88e-01	82.7%	83.9%
6q45G01	1.10.287.80	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain	0.61	36.0	3.12e-01	76.5%	39.7%
5wp3B00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.60	38.0	3.77e-01	79.6%	60.8%
4ioeA00	1.10.287.850	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain	0.59	35.0	3.76e-01	76.5%	66.7%
2ot4A03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.57	52.0	5.10e-01	100.0%	91.6%
3u2rA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.56	41.0	3.69e-01	76.5%	90.4%
2p0nA00	1.20.120.520	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like	0.56	44.0	3.82e-01	86.7%	94.4%
4akgA02	1.20.140.100	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Dynein motor heavy chain, linker domain, N-terminal subdomain	0.55	49.0	4.16e-01	100.0%	60.7%
2etdA00	1.20.1440.20	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain	0.55	41.0	3.72e-01	94.9%	56.0%
1fntc01	1.20.120.180	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain	0.55	50.0	4.02e-01	100.0%	68.1%
2mr7A00	1.10.1200.10	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like	0.54	37.0	3.84e-01	70.4%	83.5%
1g4uS01	1.20.120.260	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain	0.54	46.0	4.30e-01	95.9%	81.1%
3bvxA02	1.20.1270.50	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain	0.54	48.0	4.59e-01	98.0%	84.7%
3uumA00	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	37.0	3.45e-01	70.4%	81.1%
5figA00	1.20.1270.360	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.54	42.0	4.19e-01	90.8%	81.0%
4nlcA01	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.54	46.0	3.40e-01	95.9%	79.0%
4p9fA02	1.20.120.530	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like	0.53	37.0	3.30e-01	90.8%	50.0%
3iqcA00	1.20.120.340	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS	0.52	41.0	3.88e-01	98.0%	70.6%
7sf7A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.52	45.0	3.33e-01	99.0%	94.8%
2cfqA01	1.20.1250.20	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains	0.51	40.0	3.14e-01	82.7%	71.7%
4gc0A01	1.20.1250.20	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains	0.51	46.0	3.43e-01	100.0%	47.4%
2g38B00	1.20.1260.20	Mainly Alpha › Up-down Bundle › Ferritin › PPE superfamily	0.51	42.0	3.50e-01	89.8%	92.5%
6z74C02	1.20.120.530	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like	0.51	38.0	3.34e-01	94.9%	50.3%
2wh5A00	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.51	40.0	4.23e-01	85.7%	100.0%
5aexJ00	1.10.3430.10	Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains	0.51	44.0	2.95e-01	100.0%	70.3%
3vz3A01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.50	39.0	2.99e-01	87.8%	58.9%

ECOD (31)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3856542	110.1.1.4 ↗	alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN	0.85	65.0	6.34e-01	84.7%	74.3%
3853376	110.1.1.4 ↗	alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN	0.83	64.0	6.57e-01	88.8%	84.2%
4395975	110.1.1.4 ↗	alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN	0.82	63.0	6.35e-01	86.7%	80.0%
3550046	110.1.1.4 ↗	alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN	0.81	63.0	6.29e-01	86.7%	80.0%
3552465	110.1.1.4 ↗	alpha arrays › DEATH domain › DEATH domain › DEATH domain › PYRIN	0.79	62.0	6.34e-01	89.8%	85.3%
3589846	2006.1.1.18 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2	0.71	53.0	4.08e-01	79.6%	52.3%
3592927	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.67	35.0	3.02e-01	76.5%	32.9%
3699295	5086.1.1.158 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Sec5	0.66	38.0	3.46e-01	73.5%	43.1%
4100298	5051.1.1.10 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2	0.64	47.0	2.99e-01	76.5%	83.7%
4109644	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.64	33.0	2.88e-01	86.7%	33.8%
3459967	142.1.1.0 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors	0.64	40.0	3.78e-01	71.4%	52.5%
3284489	2006.1.1.18 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2	0.62	46.0	3.62e-01	79.6%	52.7%
5083949	5086.1.1.84 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND	0.61	37.0	3.32e-01	76.5%	45.4%
3668668	101.1.1.29 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3	0.61	39.0	3.61e-01	71.4%	50.4%
4167563	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.60	35.0	3.19e-01	76.5%	44.0%
3950911	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.60	35.0	3.15e-01	76.5%	42.2%
3801576	4953.1.1.0 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like	0.60	43.0	4.32e-01	75.5%	90.0%
5013445	601.7.1.2 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN	0.58	52.0	4.69e-01	95.9%	83.8%
3620069	633.1.1.0 ↗	alpha bundles › Bromodomain-like › Bromodomain › Bromodomain	0.56	41.0	4.01e-01	94.9%	70.5%
4570542	3806.1.1.1 ↗	alpha complex topology › Carboxysomal shell beta carbonic anhydrase N-terminal domain › Carboxysomal shell beta carbonic anhydrase N-terminal domain › Carboxysomal shell beta carbonic anhydrase N-terminal domain › CsoSCA_N	0.55	38.0	3.94e-01	70.4%	78.9%
3671851	5086.1.1.47 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Auxin_canalis	0.55	42.0	3.76e-01	100.0%	58.5%
3373899	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.54	39.0	2.52e-01	74.5%	71.8%
3923983	174.1.1.44 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › PF30976	0.53	36.0	2.97e-01	70.4%	93.3%
4137553	109.62.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › AFF4 C-terminal homology domain › AFF4 C-terminal homology domain › AFF4_CHD	0.53	36.0	2.90e-01	72.4%	90.9%
5053156	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.52	47.0	3.58e-01	99.0%	45.7%
3971778	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.52	45.0	3.62e-01	98.0%	47.5%
3714977	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.52	38.0	3.66e-01	93.9%	66.1%
4996029	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.51	38.0	2.63e-01	96.9%	22.9%
3829013	304.1.1.1 ↗	a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C	0.50	36.0	2.86e-01	74.5%	55.7%
3964811	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.50	44.0	3.56e-01	100.0%	49.0%
4156258	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.50	45.0	3.56e-01	100.0%	54.0%

D2 high residues 296-353

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02438.22 best	Adeno_100	43.1	2.50e-11	100.0%	9.8%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1j78A05	1.10.246.10	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.61	41.0	4.09e-01	89.7%	68.3%
1icrA00	3.40.109.10	Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase	0.60	41.0	2.74e-01	70.7%	26.9%
7dg2C01	1.10.10.1200	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif	0.56	41.0	3.76e-01	77.6%	94.7%
1hlvA02	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.56	39.0	3.88e-01	91.4%	71.7%
6e1mA01	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.53	47.0	3.98e-01	100.0%	82.1%
5zorA01	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.52	35.0	3.30e-01	75.9%	56.2%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3596992	632.7.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain	0.67	48.0	3.89e-01	74.1%	81.9%
3346187	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.61	50.0	4.75e-01	93.1%	77.1%
3632799	632.1.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain	0.59	46.0	3.43e-01	82.8%	74.1%
5018636	605.1.1.3 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_2	0.58	42.0	3.96e-01	100.0%	64.3%
3262016	2008.6.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central	0.58	46.0	3.07e-01	89.7%	65.7%
3200876	190.1.1.0 ↗	alpha arrays › HMG-box-like › HMG-box › HMG-box	0.54	44.0	3.90e-01	94.8%	66.7%
3935700	101.1.17.2 ↗	alpha arrays › HTH › HTH › FF domain › FF	0.54	39.0	3.81e-01	96.6%	69.2%
3486308	3818.1.1.0 ↗	alpha arrays › PHAX RNA-binding domain › PHAX RNA-binding domain › PHAX RNA-binding domain	0.51	44.0	3.73e-01	98.3%	77.0%

D3 medium residues 357-377_449-460_542-602_680-734

PDB

Domain cluster: rep: 100K__YP_009325348__Bat_mastadenovirus_G__2015376__D293-384_422-438_476-510

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02438.22 best	Adeno_100	91.3	6.50e-26	45.6%	11.0%
PF02438.22	Adeno_100	80.4	1.20e-22	37.6%	9.3%

D4 medium residues 378-448

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02438.22 best	Adeno_100	80.7	1.00e-22	100.0%	12.1%