100K

Euk-Vir

Turkey_aviadenovirus_5

100K__YP_008719863__Turkey_aviadenovirus_5__1408258

Identity

67.3 mean pLDDT

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Aviadenovirus› turkey_adenovirus_5

TaxID: 1408258

View cluster (53 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-90

PDB

Domain cluster: rep: hexon_assembly_protein_100K__YP_006383567__Goose_adenovirus_4__1193422__D5-84

D2 medium residues 316-378

PDB

Domain cluster: rep: 100_kDa_protein__YP_003933592__Turkey_adenovirus_1__878329__D271-317_329-344

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02438.22 best	Adeno_100	82.8	2.40e-23	100.0%	10.6%

D3 medium residues 529-578_632-707

PDB

Domain cluster: rep: 100K__YP_009325348__Bat_mastadenovirus_G__2015376__D293-384_422-438_476-510

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02438.22 best	Adeno_100	122.5	2.20e-35	61.1%	12.8%
PF02438.22	Adeno_100	77.8	7.80e-22	40.5%	8.4%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6h7bA01	1.10.1900.10	Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein	0.71	29.0	3.73e-01	82.5%	63.5%
1w27A02	1.20.200.10	Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain)	0.60	44.0	3.23e-01	73.8%	95.5%
4hr1A00	1.20.1270.410	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.53	29.0	2.98e-01	87.3%	54.2%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3382549	4156.1.1.0 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like	0.53	32.0	3.51e-01	82.5%	72.4%
3659174	138.1.1.0 ↗	alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain	0.52	30.0	3.29e-01	88.9%	69.0%
3463721	5077.1.1.0 ↗	extended segments › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein	0.52	37.0	3.89e-01	73.8%	81.7%

D4 medium residues 579-631

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02438.22 best	Adeno_100	48.7	5.10e-13	100.0%	8.9%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ejbH02	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.61	48.0	3.22e-01	96.2%	52.3%
3txsC01	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.59	40.0	3.63e-01	71.7%	50.7%
1yqyA01	3.90.176.10	Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1	0.58	47.0	3.16e-01	88.7%	72.5%
1khvA04	6.10.140.320	Special › Helix non-globular › Helix Hairpins ›	0.58	40.0	4.04e-01	75.5%	79.6%
2m6uA00	1.20.81.20	Mainly Alpha › Up-down Bundle › Receptor-associated Protein ›	0.58	43.0	3.83e-01	84.9%	70.7%
1i6pA00	3.40.1050.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase	0.57	48.0	3.29e-01	98.1%	66.8%
2rkhA02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.57	39.0	3.49e-01	71.7%	69.7%
7s0rB01	1.20.81.20	Mainly Alpha › Up-down Bundle › Receptor-associated Protein ›	0.56	44.0	4.09e-01	94.3%	68.4%
4l0rB00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.56	38.0	3.51e-01	71.7%	56.2%
3fixA00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.53	43.0	3.20e-01	100.0%	76.4%
1nt2B02	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.53	37.0	3.55e-01	81.1%	61.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3952557	207.8.1.1 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD	0.87	66.0	3.82e-01	79.2%	10.9%
3957152	2486.1.1.0 ↗	a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase	0.71	56.0	3.52e-01	86.8%	65.9%
4976497	4163.1.1.0 ↗	alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like	0.58	42.0	3.22e-01	77.4%	44.2%
4942548	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	39.0	2.98e-01	86.8%	50.7%

D5 medium residues 708-796

PDB

Domain cluster: rep: 100K__YP_009174953__Simian_adenovirus_8__413258__D559-661

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02438.22 best	Adeno_100	140.7	7.10e-41	98.9%	14.3%