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100K
Euk-VirDuck_adenovirus_2
100K__YP_009047166__Duck_adenovirus_2__1520006
Identity
- Accession:
- YP_009047166 ↗
- Protein ID:
- 100K
- Kingdom:
- euk
Quality
64.9
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Aviadenovirus›
Duck_adenovirus_2
TaxID: 1520006
Cluster
View cluster (53 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-82
Domain cluster:
rep: hexon_assembly_protein_100K__YP_006383567__Goose_adenovirus_4__1193422__D5-84
D2
medium
residues 281-306_597-622
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02438.22 best | Adeno_100 | 29.3 | 3.80e-07 | 57.7% | 5.1% |
| PF02438.22 | Adeno_100 | 26.3 | 3.10e-06 | 51.9% | 4.4% |
D3
medium
residues 307-383
Domain cluster:
rep: 100K__YP_008719831__Turkey_aviadenovirus_4__1408257__D378-448
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02438.22 best | Adeno_100 | 76.1 | 2.60e-21 | 100.0% | 13.0% |
D4
medium
residues 466-520
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02438.22 best | Adeno_100 | 82.0 | 4.10e-23 | 100.0% | 8.9% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4upkA02 | 6.10.250.3360 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 30.0 | 3.25e-01 | 72.7% | 60.9% |
| 2cw7A02 | 1.10.10.1010 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV | 0.54 | 37.0 | 2.88e-01 | 76.4% | 61.6% |
| 4rfsS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.52 | 41.0 | 3.01e-01 | 98.2% | 51.9% |
| 5b2nA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 35.0 | 2.37e-01 | 76.4% | 28.9% |
| 1biqA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.50 | 35.0 | 2.24e-01 | 78.2% | 39.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3785068 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 32.0 | 2.95e-01 | 81.8% | 37.3% |
| 4681028 | 2007.6.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › PGI | 0.56 | 40.0 | 2.61e-01 | 76.4% | 23.0% |
| 3236053 | 7568.1.1.0 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain | 0.52 | 41.0 | 3.33e-01 | 98.2% | 77.8% |
D5
medium
residues 696-782
Domain cluster:
rep: 100K__YP_009174953__Simian_adenovirus_8__413258__D559-661
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02438.22 best | Adeno_100 | 99.4 | 2.30e-28 | 100.0% | 14.7% |