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101L
Euk-VirYaba_monkey_tumor_virus
101L__NP_938356__Yaba_monkey_tumor_virus__38804
Identity
- Accession:
- NP_938356 ↗
- Protein ID:
- 101L
- Kingdom:
- euk
Quality
71.5
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Yatapoxvirus›
Yaba_monkey_tumor_virus
TaxID: 38804
Cluster
View cluster (29 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 471-609_626-637
Domain cluster:
rep: p4a_precursor__YP_009268819__Pteropox_virus__1873698__D448-606_642-653
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03395.20 best | Pox_P4A | 239.3 | 8.90e-71 | 99.3% | 16.2% |
D2
high
residues 737-889
D3
medium
residues 35-183
Domain cluster:
rep: 101L_protein__NP_073486__Yaba-like_disease_virus__132475__D42-179
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03395.20 best | Pox_P4A | 185.5 | 1.70e-54 | 100.0% | 16.6% |
D4
medium
residues 184-288_344-358
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03395.20 best | Pox_P4A | 113.1 | 1.20e-32 | 93.3% | 11.7% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c7aA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.54 | 41.0 | 3.58e-01 | 83.3% | 96.0% |
| 1ovaA02 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.52 | 43.0 | 3.46e-01 | 89.2% | 95.7% |
| 2yskA00 | 1.10.490.110 | Mainly Alpha › Orthogonal Bundle › Globin-like › Uncharacterized conserved protein DUF2267 | 0.51 | 42.0 | 3.98e-01 | 88.3% | 91.0% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4979710 | 604.39.1.3 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF-ribofla_trS | 0.52 | 37.0 | 3.29e-01 | 72.5% | 93.3% |
| 4400461 | 6028.1.1.0 ↗ | alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor | 0.51 | 30.0 | 3.75e-01 | 73.3% | 100.0% |
D5
medium
residues 289-343
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03395.20 best | Pox_P4A | 31.7 | 5.00e-08 | 100.0% | 6.4% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fs7A01 | 1.10.1130.10 | Mainly Alpha › Orthogonal Bundle › Flavocytochrome C3; Chain A, domain 2 › Flavocytochrome C3; Chain A | 0.61 | 46.0 | 2.96e-01 | 85.5% | 48.6% |
| 2kr7A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.60 | 32.0 | 3.20e-01 | 85.5% | 43.9% |
| 1p1hB01 | 3.30.2360.10 | Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain | 0.53 | 36.0 | 2.63e-01 | 70.9% | 94.9% |
| 2hxsA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 39.0 | 2.68e-01 | 78.2% | 25.3% |
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 2.83e-01 | 80.0% | 76.4% |
| 5ek8A01 | 2.60.40.3330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 35.0 | 2.81e-01 | 70.9% | 82.5% |
| 1uzxA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.53 | 40.0 | 3.15e-01 | 90.9% | 80.7% |
| 7sxqA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 39.0 | 2.66e-01 | 87.3% | 81.5% |
| 3viqA00 | 6.10.140.1020 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 37.0 | 2.96e-01 | 78.2% | 44.3% |
| 3luqB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 34.0 | 2.84e-01 | 89.1% | 33.3% |
| 1havB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 38.0 | 3.27e-01 | 89.1% | 61.2% |
| 1jx4A04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.51 | 35.0 | 2.98e-01 | 94.5% | 41.8% |
| 2bhkA00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.51 | 41.0 | 3.36e-01 | 90.9% | 87.6% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.51 | 37.0 | 3.27e-01 | 76.4% | 73.3% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3593808 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 47.0 | 3.88e-01 | 76.4% | 57.0% |
| 3937672 | 67.1.1.1 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C | 0.64 | 37.0 | 2.93e-01 | 87.3% | 27.0% |
| 3895502 | 67.1.1.1 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C | 0.63 | 36.0 | 3.24e-01 | 87.3% | 38.7% |
| 4958946 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.62 | 40.0 | 3.11e-01 | 85.5% | 28.8% |
| 3585959 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.62 | 45.0 | 2.88e-01 | 78.2% | 79.3% |
| 3667875 | 67.1.1.0 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain | 0.60 | 35.0 | 3.60e-01 | 87.3% | 56.4% |
| 3701641 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.60 | 46.0 | 2.96e-01 | 83.6% | 94.6% |
| 261 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.60 | 47.0 | 3.23e-01 | 90.9% | 38.2% |
| 5054559 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 47.0 | 3.90e-01 | 90.9% | 91.4% |
| 9228 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.57 | 44.0 | 3.07e-01 | 94.5% | 26.2% |
| 4863479 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.57 | 45.0 | 3.20e-01 | 94.5% | 31.3% |
| 4021383 | 59.1.4.2 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 | 0.55 | 44.0 | 2.65e-01 | 89.1% | 42.0% |
| 4523828 | 101.26.1.2 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 | 0.55 | 41.0 | 3.21e-01 | 87.3% | 40.0% |
| 5073529 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 42.0 | 3.57e-01 | 90.9% | 89.5% |
| 3583546 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.54 | 33.0 | 2.54e-01 | 87.3% | 23.7% |
| 3475221 | 5.1.5.173 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_VPS8, Beta-prop_WDR3_2nd | 0.54 | 40.0 | 2.53e-01 | 83.6% | 80.0% |
| 3392234 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.54 | 42.0 | 2.93e-01 | 90.9% | 44.3% |
| 4948543 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.52 | 38.0 | 3.22e-01 | 96.4% | 45.3% |
| 3691025 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 39.0 | 2.79e-01 | 80.0% | 51.5% |
| 3519635 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.52 | 32.0 | 2.66e-01 | 87.3% | 29.1% |
| 3599732 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 39.0 | 2.69e-01 | 85.5% | 52.5% |
| 3709549 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.52 | 42.0 | 3.05e-01 | 90.9% | 81.2% |
| 3983816 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.52 | 42.0 | 2.82e-01 | 96.4% | 23.2% |
| 3477515 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.51 | 35.0 | 2.87e-01 | 89.1% | 35.7% |
| 4953135 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.51 | 31.0 | 2.40e-01 | 87.3% | 22.1% |
| 4459698 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.50 | 36.0 | 3.35e-01 | 92.7% | 57.3% |
| 3621895 | 2004.1.1.45 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V | 0.50 | 38.0 | 2.35e-01 | 80.0% | 58.3% |
| 3598343 | 67.1.1.0 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain | 0.50 | 35.0 | 2.96e-01 | 78.2% | 60.0% |
| 5002351 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.50 | 35.0 | 2.25e-01 | 81.8% | 45.6% |
D6
medium
residues 359-458
Domain cluster:
rep: putative_virion_core_protein_P4a_precursor__YP_009112825__Parapoxvirus_red_deer_HL953__1579460__D14-39_372-451
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03395.20 best | Pox_P4A | 184.5 | 3.30e-54 | 100.0% | 11.3% |
D7
medium
residues 640-724