104K_protein

Euk-Vir

Beet_soil-borne_virus

104K_protein__NP_612623__Beet_soil-borne_virus__46436

Identity

53.8 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Virgaviridae› Pomovirus› Beet_soil-borne_virus

TaxID: 46436

View cluster (2 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-152

PDB

Domain cluster: rep: hypothetical_protein__YP_009337424__Hubei_virga-like_virus_1__1923324__D95-184_198-245

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00721.28 best	TMV_coat	74.1	2.20e-20	96.7%	92.5%

D2 medium residues 153-164_166-231

PDB

D3 medium residues 285-357

PDB

D4 medium residues 358-469

PDB

Domain cluster: rep: putative_coat_protein__YP_009220368__Colombian_potato_soil-borne_virus__1758139__D341-443

D5 medium residues 470-560

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2pw4A00	1.10.3300.10	Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain	0.63	48.0	3.85e-01	81.3%	73.8%
4gouA03	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.60	46.0	3.66e-01	82.4%	79.2%
3fdqA01	1.20.120.1030	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain	0.56	44.0	4.02e-01	84.6%	88.5%
3vkgA18	1.10.8.720	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Region D6 of dynein motor	0.56	38.0	3.13e-01	70.3%	61.3%
2y39A00	1.20.120.1490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.55	37.0	3.49e-01	84.6%	56.4%
2cdqA02	1.20.120.1320	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain	0.51	38.0	3.80e-01	80.2%	79.4%
2wdqC00	1.20.1300.10	Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit	0.51	37.0	3.38e-01	75.8%	73.6%
1s35A01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	44.0	4.25e-01	94.5%	100.0%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4020710	3924.1.1.1 ↗	alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Fungal_trans_2	0.62	54.0	3.60e-01	100.0%	84.3%
3584523	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.54	40.0	3.28e-01	76.9%	44.4%
3955706	102.1.2.1 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD	0.52	39.0	3.25e-01	83.5%	73.5%
3172662	605.1.1.145 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Yos1	0.50	36.0	3.83e-01	85.7%	87.5%