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116R

Euk-Vir

Yaba_monkey_tumor_virus

116R__NP_938371__Yaba_monkey_tumor_virus__38804

Identity

Accession:: NP_938371 ↗
Protein ID:: 116R
Kingdom:: euk

Quality

73.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Yatapoxvirus› Yaba_monkey_tumor_virus

TaxID: 38804

Cluster

View cluster (58 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 172-347

PDB

Domain cluster: rep: DNA-directed_RNA_polymerase_subunit_beta__YP_009162498__Salmon_gill_poxvirus__1680908__D173-349

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12415.15 best	rpo132	65.9	2.20e-18	18.2%	96.9%

D2 medium residues 51-133

PDB

Domain cluster: rep: RNA_polymerase_RPO132__YP_008004199__Choristoneura_biennis_entomopoxvirus__10288__D47-126

D3 medium residues 466-589

PDB

Domain cluster: rep: DNA-directed_RNA_polymerase_subunit_beta__YP_003406778__Marseillevirus_marseillevirus__694581__D519-604

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04565.22 best	RNA_pol_Rpb2_3	23.0	9.80e-05	23.4%	41.2%

D4 medium residues 590-677

PDB

Domain cluster: rep: DNA-directed_RNA_polymerase_subunit_2__YP_004346997__Lausannevirus__999883__D585-653

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04567.23 best	RNA_pol_Rpb2_5	31.8	2.90e-07	55.7%	57.6%

D5 medium residues 710-743_760-781_873-892

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1rl2A01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.55	27.0	3.13e-01	88.2%	62.5%

D6 medium residues 744-759_893-1018

PDB

Domain cluster: rep: RNA_polymerase_subunit_RPO132__YP_009046186__Penguinpox_virus__648998__D714-766_870-915_991-1015

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00562.34 best	RNA_pol_Rpb2_6	58.5	9.20e-16	90.1%	28.9%

D7 medium residues 782-835

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8igrI01	2.40.270.10	Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6	0.75	62.0	4.33e-01	92.6%	32.4%
6ruiB07	2.40.50.150	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain	0.73	57.0	4.36e-01	87.0%	45.2%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2773895	325.1.7.2 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6	0.93	74.0	5.97e-01	83.3%	47.9%
4946076	325.1.7.2 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6	0.76	65.0	5.05e-01	100.0%	56.8%
4026621	325.1.7.2 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6	0.75	59.0	4.68e-01	88.9%	47.0%
4069281	325.1.7.2 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6	0.74	60.0	4.26e-01	88.9%	33.8%
5070341	325.1.7.2 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6	0.74	64.0	4.96e-01	100.0%	55.2%
4970832	325.1.7.0 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif	0.74	64.0	4.95e-01	100.0%	55.2%
4956728	325.1.7.2 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6	0.74	64.0	4.89e-01	100.0%	56.9%
4599969	325.1.7.0 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif	0.73	57.0	4.68e-01	88.9%	52.4%
4682340	325.1.7.2 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6	0.72	63.0	4.84e-01	100.0%	56.0%
3302882	325.1.7.2 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6	0.72	58.0	4.35e-01	87.0%	56.8%
4932693	325.1.7.2 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6	0.72	62.0	4.85e-01	100.0%	57.5%
3610296	325.1.7.2 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6	0.71	57.0	4.55e-01	88.9%	49.1%
3728982	325.1.7.2 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6	0.66	56.0	4.35e-01	100.0%	55.4%
4135657	325.1.7.0 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif	0.66	56.0	4.28e-01	100.0%	50.4%
3786933	325.1.7.2 ↗	a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6	0.64	55.0	4.26e-01	100.0%	57.6%

D8 medium residues 1076-1164

PDB