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116R_protein
Euk-VirYaba-like_disease_virus
116R_protein__NP_073501__Yaba-like_disease_virus__132475
Identity
- Accession:
- NP_073501 ↗
- Protein ID:
- 116R_protein
- Kingdom:
- euk
Quality
71.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Yatapoxvirus›
Yaba-like_disease_virus
TaxID: 132475
Cluster
View cluster (58 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 492-669
Domain cluster:
rep: RNA_polymerase_RPO132__YP_008004199__Choristoneura_biennis_entomopoxvirus__10288__D504-695
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04567.23 best | RNA_pol_Rpb2_5 | 31.1 | 4.90e-07 | 27.5% | 56.1% |
D2
medium
residues 28-52_139-167_358-426
D3
medium
residues 53-138
D4
medium
residues 168-245_311-345
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ruiB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.78 | 69.0 | 5.83e-01 | 94.7% | 98.4% |
| 4egwA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.59 | 36.0 | 3.46e-01 | 87.6% | 51.9% |
| 1omoA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.57 | 41.0 | 3.76e-01 | 74.3% | 64.4% |
| 1wr2A01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.56 | 40.0 | 3.62e-01 | 94.7% | 53.5% |
| 1af6A00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.55 | 42.0 | 2.87e-01 | 80.5% | 39.4% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.55 | 43.0 | 4.10e-01 | 84.1% | 83.1% |
| 6hswA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 46.0 | 3.19e-01 | 93.8% | 37.5% |
| 2k4vA00 | 3.30.160.370 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 | 0.54 | 47.0 | 4.56e-01 | 96.5% | 88.8% |
| 4ikbA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 35.0 | 3.43e-01 | 94.7% | 57.4% |
| 4g59B00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.54 | 48.0 | 4.28e-01 | 100.0% | 85.9% |
| 2ebkA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 40.0 | 3.90e-01 | 78.8% | 75.8% |
| 2e5aA02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.53 | 40.0 | 4.30e-01 | 84.1% | 97.8% |
| 6t5kC00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 43.0 | 3.45e-01 | 89.4% | 93.8% |
| 2rauA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 42.0 | 2.96e-01 | 86.7% | 39.1% |
| 4ibnA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 40.0 | 3.34e-01 | 80.5% | 97.9% |
| 5w0kA01 | 3.90.380.20 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II | 0.52 | 44.0 | 3.24e-01 | 95.6% | 51.7% |
| 6r3wA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 43.0 | 3.85e-01 | 92.0% | 88.8% |
| 7zqiA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.51 | 44.0 | 3.84e-01 | 98.2% | 84.3% |
| 4jhyA00 | 3.30.530.80 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.51 | 43.0 | 3.87e-01 | 92.9% | 73.1% |
| 1a7tA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.51 | 43.0 | 3.53e-01 | 96.5% | 85.5% |
| 1gesA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.51 | 38.0 | 3.89e-01 | 81.4% | 84.1% |
| 1wzvA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.51 | 37.0 | 3.45e-01 | 77.9% | 65.3% |
| 3h2gA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 38.0 | 2.96e-01 | 82.3% | 92.5% |
| 3n91A02 | 2.40.128.420 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 41.0 | 3.92e-01 | 94.7% | 74.3% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2773894 | 4041.1.1.2 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › rpo132 | 0.95 | 89.0 | 7.25e-01 | 96.5% | 93.5% |
| 3258377 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.68 | 39.0 | 4.34e-01 | 92.0% | 71.1% |
| 5056888 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 34.0 | 4.11e-01 | 72.6% | 82.4% |
| 3970343 | 5084.5.1.24 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Gcw_chp | 0.58 | 42.0 | 3.46e-01 | 77.0% | 71.6% |
| 3168414 | 4099.1.1.46 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30283 | 0.57 | 41.0 | 4.01e-01 | 75.2% | 68.0% |
| 3729393 | 243.1.1.78 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26534 | 0.56 | 32.0 | 2.99e-01 | 73.5% | 42.8% |
| 418498 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.56 | 41.0 | 3.67e-01 | 75.2% | 73.1% |
| 4951310 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 44.0 | 3.07e-01 | 85.8% | 42.5% |
| 3997170 | 9.1.1.48 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 | 0.56 | 42.0 | 3.58e-01 | 79.6% | 80.5% |
| 3237854 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.56 | 40.0 | 4.01e-01 | 74.3% | 85.2% |
| 4069753 | 295.1.1.2 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA | 0.54 | 43.0 | 4.08e-01 | 84.1% | 83.0% |
| 3241736 | 9.1.1.48 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 | 0.54 | 41.0 | 3.43e-01 | 79.6% | 74.4% |
| 3191174 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 44.0 | 3.11e-01 | 92.9% | 81.5% |
| 3170663 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.53 | 41.0 | 2.91e-01 | 80.5% | 60.6% |
| 3217155 | 243.1.1.97 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382_N | 0.53 | 33.0 | 3.03e-01 | 75.2% | 47.3% |
| 3628460 | 3308.1.1.0 ↗ | beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme | 0.52 | 34.0 | 3.99e-01 | 83.2% | 93.8% |
| 3224530 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.52 | 40.0 | 3.34e-01 | 81.4% | 65.5% |
| 3197622 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.52 | 36.0 | 3.77e-01 | 72.6% | 85.7% |
| 3283989 | 7579.1.1.24 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LIP | 0.52 | 40.0 | 2.73e-01 | 82.3% | 44.8% |
| 3831275 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.52 | 46.0 | 3.30e-01 | 99.1% | 73.1% |
| 3474420 | 220.1.1.123 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st | 0.51 | 41.0 | 3.81e-01 | 87.6% | 74.7% |
| 3286629 | 7579.1.1.24 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LIP | 0.51 | 39.0 | 2.72e-01 | 80.5% | 49.9% |
| 3995515 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 44.0 | 3.26e-01 | 95.6% | 76.3% |
D5
medium
residues 670-744_762-780_878-899
D6
medium
residues 745-761_900-1021
Domain cluster:
rep: RNA_polymerase_subunit_RPO132__YP_009046186__Penguinpox_virus__648998__D714-766_870-915_991-1015
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00562.34 best | RNA_pol_Rpb2_6 | 59.9 | 3.60e-16 | 90.6% | 28.4% |
D7
medium
residues 781-876
D8
medium
residues 1040-1165