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124R_protein

Euk-Vir

Yaba-like_disease_virus

124R_protein__NP_073509__Yaba-like_disease_virus__132475

Identity

Accession:
NP_073509 ↗
Protein ID:
124R_protein
Kingdom:
euk

Quality

79.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Yatapoxvirus› Yaba-like_disease_virus

TaxID: 132475

Cluster

View cluster (23 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-103
PDB
Domain cluster: rep: inhibits_MHC_class_II_antigen_presentation__YP_009408334__Murmansk_poxvirus__2025359__D4-95
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05989.18 best Chordopox_A35R 117.2 1.10e-33 100.0% 54.0%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 29.0 3.59e-01 100.0% 87.3%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3946321 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 29.0 3.37e-01 97.9% 80.0%
D2 high residues 121-175
PDB
Domain cluster: rep: ORF111_hypothetical_protein__NP_957888__Orf_virus__10258__D117-171
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05989.18 best Chordopox_A35R 80.4 2.10e-22 100.0% 31.0%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bw2A01 3.10.20.420 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain 0.68 54.0 5.43e-01 87.3% 92.7%
3ng0A01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.62 52.0 4.32e-01 98.2% 85.4%
3gg6A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 46.0 3.53e-01 87.3% 58.3%
3fh1A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 48.0 3.96e-01 100.0% 84.4%
1idpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 50.0 3.78e-01 100.0% 88.4%
2pmvA02 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.59 46.0 3.69e-01 85.5% 93.5%
1v5oA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 45.0 3.70e-01 85.5% 72.5%
4melA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 43.0 3.73e-01 85.5% 83.0%
3w6wB01 1.10.1280.10 Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase 0.57 41.0 2.46e-01 76.4% 71.4%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 49.0 3.80e-01 100.0% 86.3%
1wgdA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 43.0 3.72e-01 85.5% 80.6%
3jyuA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 43.0 3.74e-01 85.5% 86.7%
1n6zA00 3.10.20.250 Alpha Beta › Roll › Ubiquitin-like (UB roll) › YML108W-like 0.56 43.0 3.56e-01 85.5% 76.2%
1i42A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 42.0 3.70e-01 85.5% 83.1%
1zxhA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 42.0 4.21e-01 87.3% 98.2%
1vx7X00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.54 41.0 3.51e-01 85.5% 95.9%
1z7pA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 38.0 2.98e-01 76.4% 58.1%
1pfoA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.52 43.0 3.16e-01 98.2% 63.4%
1s5aB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.26e-01 100.0% 86.7%
5ly3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 38.0 2.70e-01 83.6% 31.5%
2jacA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 36.0 2.98e-01 76.4% 66.7%
2bteA05 3.10.20.590 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 37.0 3.67e-01 85.5% 93.5%
2bmoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 2.93e-01 100.0% 80.9%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3251351 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.66 55.0 4.44e-01 100.0% 91.7%
3797422 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.66 56.0 3.94e-01 100.0% 76.3%
4951924 239.4.1.1 ↗ beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N 0.65 56.0 4.46e-01 100.0% 88.7%
5062823 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.63 53.0 3.62e-01 100.0% 37.2%
5011560 239.4.1.0 ↗ beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain 0.63 52.0 4.36e-01 98.2% 88.6%
4927129 239.4.1.1 ↗ beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N 0.62 53.0 4.42e-01 98.2% 88.0%
5081183 239.4.1.1 ↗ beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N 0.61 50.0 4.25e-01 96.4% 88.0%
4491999 239.4.1.1 ↗ beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N 0.61 51.0 4.22e-01 98.2% 84.8%
3891585 239.4.1.1 ↗ beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N 0.60 50.0 4.12e-01 98.2% 89.1%
2390066 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.60 46.0 3.95e-01 83.6% 77.8%
4998676 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.60 50.0 3.48e-01 100.0% 34.6%
1244069 243.1.1.27 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4348 0.58 46.0 3.91e-01 100.0% 94.6%
1170111 243.1.1.27 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4348 0.58 48.0 3.95e-01 100.0% 91.0%
3691243 239.4.1.0 ↗ beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain 0.58 47.0 3.83e-01 96.4% 84.3%
5020021 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.57 46.0 3.79e-01 100.0% 99.2%
5009614 239.4.1.3 ↗ beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N_2 0.56 46.0 3.96e-01 96.4% 92.6%
3719864 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 45.0 3.78e-01 94.5% 98.1%
4011330 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 45.0 3.61e-01 100.0% 80.7%
3205299 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.56 41.0 2.97e-01 83.6% 26.5%
3527311 221.1.1.121 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DCX2_DCDC1 0.56 43.0 3.59e-01 87.3% 75.2%
4927976 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 47.0 3.71e-01 100.0% 92.0%
4177746 80.1.1.1 ↗ beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn 0.55 41.0 3.40e-01 85.5% 46.4%
3527306 221.1.1.121 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DCX2_DCDC1 0.55 42.0 3.81e-01 87.3% 81.2%
4002448 109.4.1.1196 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Glyco_hydro_15 0.55 44.0 3.07e-01 98.2% 43.2%
5047754 221.10.1.0 ↗ a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain 0.54 42.0 3.64e-01 87.3% 63.3%
3620545 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.53 40.0 3.30e-01 89.1% 80.0%
4074418 221.15.1.0 ↗ a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.53 40.0 3.93e-01 85.5% 96.7%
3717801 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.52 35.0 2.92e-01 72.7% 59.2%
3256558 304.9.1.23 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_5 0.52 37.0 2.94e-01 76.4% 60.0%
4526098 3696.1.1.1 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.52 40.0 3.65e-01 90.9% 100.0%
3934273 3948.1.1.0 ↗ alpha bundles › V(D)J recombination-activating protein 1 helical bundle domain › V(D)J recombination-activating protein 1 helical bundle domain › V(D)J recombination-activating protein 1 helical bundle domain 0.51 42.0 3.03e-01 100.0% 72.1%
3619269 2484.6.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR 0.51 38.0 3.28e-01 87.3% 66.0%
4159080 167.1.1.1 ↗ alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.50 42.0 3.10e-01 94.5% 52.3%
3494618 304.9.1.23 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_5 0.50 40.0 3.04e-01 92.7% 90.0%