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127_kDa_protein

Euk-Vir

Penicillium_janczewskii_chrysovirus_1

127_kDa_protein__YP_009182332__Penicillium_janczewskii_chrysovirus_1__1755792

Identity

Accession:: YP_009182332 ↗
Protein ID:: 127_kDa_protein
Kingdom:: euk

Quality

76.5 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Chrysoviridae› Betachrysovirus› Penicillium_janczewskii_chrysovirus_1

TaxID: 1755792

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 214-272

PDB

Domain cluster: representative

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1bd3A00	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.80	56.0	3.68e-01	72.9%	87.9%
8amzP01	1.25.40.570	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.80	72.0	4.34e-01	100.0%	17.9%
2e55A00	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.78	55.0	3.65e-01	72.9%	93.3%
1bbhA00	1.20.120.10	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562	0.75	54.0	4.14e-01	76.3%	67.9%
4xriA00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.74	66.0	3.60e-01	96.6%	17.2%
1elkA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.71	62.0	4.63e-01	100.0%	59.5%
1x5bA01	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.68	58.0	4.56e-01	100.0%	60.7%
1wn0A00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.68	50.0	3.94e-01	81.4%	90.8%
4flbA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.67	56.0	4.45e-01	100.0%	58.8%
5z62E00	1.25.40.40	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI	0.64	53.0	4.49e-01	100.0%	56.9%
5u56A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.63	52.0	4.38e-01	100.0%	86.6%
6xssA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.62	52.0	4.99e-01	100.0%	84.1%
1sxjD03	1.20.272.10	Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 ›	0.62	45.0	4.03e-01	81.4%	92.3%
6x6nA01	1.20.120.260	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain	0.60	42.0	3.44e-01	74.6%	98.3%
3bvoB01	1.10.287.110	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain	0.60	44.0	3.85e-01	83.1%	88.8%
1hr6B02	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.56	40.0	2.83e-01	76.3%	70.2%
4hn9A02	1.20.58.2180	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	37.0	3.55e-01	74.6%	69.1%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5077220	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.79	69.0	4.18e-01	98.3%	17.1%
3937637	109.4.1.264 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RMD1-3	0.78	66.0	4.37e-01	94.9%	31.9%
3230309	650.1.1.9 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DNA_ligase_A_N	0.74	58.0	5.39e-01	100.0%	68.0%
3632612	109.4.1.1311 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ	0.73	66.0	3.88e-01	98.3%	33.3%
3993598	109.4.1.33 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT	0.71	61.0	3.59e-01	96.6%	20.4%
3419948	109.4.1.1146 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB	0.70	62.0	3.83e-01	100.0%	37.5%
4939044	109.4.1.207 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2	0.69	60.0	4.67e-01	100.0%	52.6%
4614	109.4.1.225 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GUN4_N	0.68	60.0	5.41e-01	100.0%	82.9%
5027357	2004.1.3.1 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR	0.64	44.0	3.16e-01	74.6%	89.1%
3601959	101.35.1.0 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX	0.63	52.0	4.41e-01	100.0%	66.4%
2801375	5069.1.1.5 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_II	0.58	44.0	3.37e-01	86.4%	55.6%

D2 medium residues 297-435_805-817

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009553287__Alternaria_alternata_chrysovirus_1__2066695__D294-443_597-609

D3 medium residues 436-468_581-625_706-717

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_010088028__Betachrysovirus_aspergilli__2164061__D430-453_571-604_703-720

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1nndA01	3.10.10.10	Alpha Beta › Roll › HIV Type 1 Reverse Transcriptase; Chain A, domain 1 › HIV Type 1 Reverse Transcriptase, subunit A, domain 1	0.57	44.0	4.45e-01	100.0%	81.5%
1l1lA01	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.57	41.0	2.60e-01	77.8%	62.2%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4804033	304.48.1.12 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mononeg_RNA_pol	0.66	55.0	3.59e-01	92.2%	76.6%
3382264	7523.1.1.4 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3	0.54	33.0	2.69e-01	87.8%	32.7%

D4 medium residues 501-535_551-580

PDB

D5 medium residues 1001-1126

PDB

Domain cluster: rep: putative_RNA-dependent_RNA_polymerase__YP_009551629__Colletotrichum_fructicola_chrysovirus_1__2304034__D1009-1132