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128_kDa

Euk-Vir

Cactus_mild_mottle_virus

128_kDa__YP_002455904__Cactus_mild_mottle_virus__229030

Identity

Accession:: YP_002455904 ↗
Protein ID:: 128_kDa
Kingdom:: euk

Quality

72.9 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Virgaviridae› Tobamovirus› Cactus_mild_mottle_virus

TaxID: 229030

Cluster

View cluster (21 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 561-614

PDB

Domain cluster: representative

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4hl4A01	1.10.8.1310	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.73	63.0	4.68e-01	100.0%	37.7%
3cxbA03	1.10.1740.30	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain	0.70	60.0	5.33e-01	100.0%	86.4%
4ne4A01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.68	56.0	3.98e-01	92.6%	92.8%
6wshA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.67	53.0	5.35e-01	88.9%	94.5%
1s8nA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.66	55.0	5.43e-01	94.4%	94.8%
3c8tA01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.65	55.0	4.60e-01	96.3%	82.5%
2lrmA00	1.10.890.30	Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein	0.65	53.0	4.74e-01	98.1%	94.0%
3l1nA01	6.10.140.790	Special › Helix non-globular › Helix Hairpins ›	0.65	44.0	4.52e-01	70.4%	84.3%
1qo0D02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.65	47.0	5.00e-01	77.8%	100.0%
1u9pA00	1.10.1220.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like	0.64	48.0	3.99e-01	81.5%	80.2%
2x1dA02	1.10.10.2120	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.62	46.0	4.23e-01	81.5%	73.0%
7cyuA01	1.10.30.10	Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain	0.60	39.0	3.90e-01	75.9%	64.9%
4dbgB02	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.59	46.0	4.51e-01	92.6%	80.3%
3hwrA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.59	47.0	3.57e-01	88.9%	50.4%
1zq9A02	1.10.8.480	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.57	44.0	3.77e-01	90.7%	68.4%
1xb2B01	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.57	42.0	4.10e-01	100.0%	75.0%
1h7cA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	44.0	3.57e-01	96.3%	100.0%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3579615	103.1.1.3 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N	0.74	62.0	5.40e-01	96.3%	62.4%
4489811	103.17.1.0 ↗	alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain	0.72	57.0	5.90e-01	88.9%	98.0%
3737217	103.1.1.9 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › HBS1_N	0.71	58.0	5.37e-01	100.0%	72.9%
3473651	2004.1.1.485 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, DEAD_2	0.69	49.0	3.10e-01	75.9%	83.5%
3172172	103.1.1.14 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4	0.68	50.0	5.34e-01	90.7%	97.8%
4976690	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.67	53.0	5.51e-01	92.6%	100.0%
3494011	109.3.1.163 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5	0.65	52.0	3.27e-01	100.0%	25.1%
4938496	103.17.1.0 ↗	alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain	0.64	49.0	4.91e-01	100.0%	87.3%
3608761	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.62	51.0	5.17e-01	100.0%	100.0%
3799090	190.1.1.0 ↗	alpha arrays › HMG-box-like › HMG-box › HMG-box	0.61	42.0	4.02e-01	72.2%	92.1%
3641099	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.60	45.0	4.37e-01	79.6%	78.3%
3486557	190.1.1.0 ↗	alpha arrays › HMG-box-like › HMG-box › HMG-box	0.59	40.0	3.66e-01	77.8%	50.0%
4933655	103.17.1.0 ↗	alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain	0.57	44.0	4.45e-01	100.0%	92.7%
3165248	2004.1.1.187 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2	0.53	38.0	2.76e-01	98.1%	22.4%
3494314	2004.1.1.499 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD_2, Helicase_C_2	0.53	41.0	2.47e-01	88.9%	17.6%

D2 high residues 688-829

PDB

Domain cluster: rep: replicase__NP_059451__Soil-borne_cereal_mosaic_virus__100887__D845-991

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF20896.3 best	ToMV_Hel_N	60.8	2.50e-16	80.3%	93.7%

D3 high residues 842-979

PDB

Domain cluster: rep: KX578043.1__AOT27930.1__X__00015__D87-267

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01443.25 best	Viral_helicase1	89.3	4.70e-25	97.8%	50.9%
PF13245.13	AAA_19	28.1	2.90e-06	82.6%	88.1%

D4 high residues 996-1135

PDB

Domain cluster: rep: TGB1_protein__NP_619560__Garlic_latent_virus__12458__D129-228

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01443.25 best	Viral_helicase1	55.1	1.40e-14	82.1%	33.3%

D5 medium residues 24-85

PDB

Domain cluster: rep: 1a_protein__YP_002640500__Gayfeather_mild_mottle_virus__578305__D32-94

D6 medium residues 383-444_456-479_516-536

PDB