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129k_replicase_protein
Euk-VirYellow_tailflower_mild_mottle_virus
129k_replicase_protein__YP_008802585__Yellow_tailflower_mild_mottle_virus__1416026
Identity
- Accession:
- YP_008802585 ↗
- Protein ID:
- 129k_replicase_protein
- Kingdom:
- euk
Quality
71.9
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Virgaviridae›
Tobamovirus›
Yellow_tailflower_mild_mottle_virus
TaxID: 1416026
Cluster
View cluster (21 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 372-468_518-534
Domain cluster:
rep: uncovered_polypeptide_polyprotein__YP_004464917_245-428__Cutthroat_trout_virus__1016879__D45-170
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01660.23 best | Vmethyltransf | 34.2 | 2.20e-08 | 90.3% | 17.7% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jyoE00 | 4.10.1330.10 | Few Secondary Structures › Irregular › non globular Virulence effector SptP fold › non globular Virulence effector SptP domain | 0.64 | 31.0 | 3.31e-01 | 85.1% | 51.0% |
| 2b9dA01 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 23.0 | 3.64e-01 | 74.6% | 92.3% |
| 2q7nA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 32.0 | 3.41e-01 | 100.0% | 58.2% |
| 3r5lA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 33.0 | 3.35e-01 | 96.5% | 52.6% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.57 | 30.0 | 3.57e-01 | 94.7% | 75.0% |
| 2nyfA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.54 | 41.0 | 2.97e-01 | 80.7% | 57.1% |
| 2xc8A00 | 2.60.40.2980 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 29.0 | 2.85e-01 | 99.1% | 47.9% |
| 2a2fX02 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.52 | 35.0 | 3.38e-01 | 82.5% | 60.5% |
| 3hwuA00 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.51 | 31.0 | 2.93e-01 | 94.7% | 47.2% |
| 1zoyA04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.51 | 19.0 | 2.46e-01 | 93.9% | 56.9% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.51 | 30.0 | 3.50e-01 | 86.0% | 85.7% |
| 4hb9A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 40.0 | 2.87e-01 | 87.7% | 76.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3326759 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.68 | 39.0 | 4.61e-01 | 84.2% | 84.0% |
| 3467170 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.57 | 29.0 | 3.64e-01 | 94.7% | 84.1% |
| 4982553 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.54 | 35.0 | 3.70e-01 | 83.3% | 72.4% |
| 3645790 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 29.0 | 2.63e-01 | 89.5% | 36.3% |
| 3930805 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 35.0 | 3.96e-01 | 90.4% | 96.5% |
| 3377582 | 632.21.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › GAUT_1 | 0.50 | 28.0 | 2.99e-01 | 70.2% | 61.1% |
| 4456198 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 38.0 | 3.26e-01 | 86.8% | 49.2% |
D2
high
residues 682-806
Domain cluster:
rep: replicase__NP_059451__Soil-borne_cereal_mosaic_virus__100887__D845-991
D3
high
residues 825-969
Domain cluster:
rep: KX578043.1__AOT27930.1__X__00015__D87-267
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01443.25 best | Viral_helicase1 | 100.7 | 1.50e-28 | 96.5% | 54.4% |
| PF13245.13 | AAA_19 | 27.5 | 4.50e-06 | 83.5% | 90.3% |
D4
high
residues 974-1111
Domain cluster:
rep: TGB1_protein__NP_619560__Garlic_latent_virus__12458__D129-228
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01443.25 best | Viral_helicase1 | 69.8 | 4.30e-19 | 83.3% | 43.0% |
D5
medium
residues 1-44
D6
medium
residues 86-101_222-351
Domain cluster:
rep: unnamed_protein_product__YP_004465359__Passion_fruit_mosaic_virus__1032457__D206-380
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01660.23 best | Vmethyltransf | 70.4 | 2.00e-19 | 96.6% | 35.0% |
D7
medium
residues 102-221
Domain cluster:
rep: RNA_replicase_component__YP_005476601__Ribgrass_mosaic_virus__51680__D99-209
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01660.23 best | Vmethyltransf | 76.0 | 4.00e-21 | 100.0% | 30.6% |
D8
medium
residues 553-619