12K_protein

Euk-Vir

Potato_virus_S

12K_protein__YP_277430__Potato_virus_S__12169

Identity

75.3 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Betaflexiviridae› Carlavirus› Potato_virus_S

TaxID: 12169

View cluster (82 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-94

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01307.23 best	Plant_vir_prot	63.3	3.00e-17	100.0%	80.0%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5yk4A04	1.10.1420.10	Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 ›	0.55	48.0	4.17e-01	98.8%	98.5%
2j0nB00	1.20.1710.10	Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like	0.54	46.0	3.63e-01	96.5%	54.0%
2npbA00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.54	27.0	2.73e-01	87.2%	42.0%
2jhjA02	1.10.340.30	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2	0.53	30.0	2.74e-01	88.4%	40.0%
2innB00	1.10.620.20	Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A	0.52	46.0	2.87e-01	98.8%	48.7%
1cl8A00	3.40.580.10	Alpha Beta › 3-Layer(aba) Sandwich › ECO RI Endonuclease; Chain A › Eco RI Endonuclease, subunit A	0.52	42.0	3.11e-01	94.2%	83.1%
3thxB04	1.10.1420.10	Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 ›	0.51	41.0	3.70e-01	91.9%	84.4%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4955941	5065.1.1.3 ↗	alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2	0.53	44.0	3.09e-01	94.2%	73.7%
4484289	633.23.1.9 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7	0.52	44.0	3.57e-01	100.0%	96.3%
4025349	3567.1.1.0 ↗	a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer	0.51	42.0	3.71e-01	90.7%	82.3%
5074454	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.51	35.0	3.11e-01	90.7%	50.0%
3543076	4106.1.1.1 ↗	few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC	0.51	43.0	3.33e-01	94.2%	66.0%
3600649	4106.1.1.0 ↗	few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack	0.51	43.0	3.37e-01	94.2%	68.9%
3254941	4.18.1.1 ↗	beta barrels › SH3 › Plus3 › Plus3 › Plus-3	0.51	26.0	2.31e-01	100.0%	28.5%
3242883	5001.1.1.41 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw	0.50	42.0	2.92e-01	96.5%	25.2%