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13_kDa_GIY-YIG-like_endonuclease

Euk-Vir

Spodoptera_frugiperda_ascovirus_1a

13_kDa_GIY-YIG-like_endonuclease__YP_762392__Spodoptera_frugiperda_ascovirus_1a__113370

Identity

Accession:
YP_762392 ↗
Protein ID:
13_kDa_GIY-YIG-like_endonuclease
Kingdom:
euk

Quality

78.3 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Ascoviridae› Ascovirus› Spodoptera_frugiperda_ascovirus_1a

TaxID: 113370

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-111
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01541.31 best GIY-YIG 51.9 1.10e-13 70.2% 85.9%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.68 30.0 3.94e-01 80.8% 73.7%
4gr5C01 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.68 34.0 4.21e-01 70.2% 76.6%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.67 33.0 4.25e-01 70.2% 80.3%
1gh9A00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.66 38.0 4.51e-01 90.4% 84.5%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.65 49.0 5.07e-01 79.8% 88.5%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.59 31.0 3.27e-01 80.8% 55.2%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 40.0 3.55e-01 74.0% 100.0%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 32.0 3.35e-01 79.8% 62.5%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.53 28.0 3.16e-01 78.8% 65.8%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 36.0 3.02e-01 70.2% 99.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4158495 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.91 73.0 7.86e-01 86.5% 96.7%
3942510 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.90 72.0 7.58e-01 85.6% 91.6%
4997210 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.89 66.0 7.11e-01 78.8% 88.9%
4397568 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.88 71.0 7.62e-01 86.5% 96.7%
3971569 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.87 63.0 6.93e-01 76.0% 91.8%
4557537 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.86 63.0 6.79e-01 76.9% 87.8%
4623707 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.85 70.0 7.38e-01 87.5% 95.8%
4669741 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.84 63.0 6.57e-01 79.8% 84.2%
5046850 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.82 59.0 6.33e-01 75.0% 86.7%
3965455 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.81 60.0 6.47e-01 76.9% 88.9%
3365225 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.81 50.0 4.76e-01 70.2% 54.2%
5053865 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.76 58.0 6.17e-01 78.8% 96.7%
4671238 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.75 67.0 5.21e-01 95.2% 77.1%
3946107 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.73 57.0 5.97e-01 81.7% 96.8%
4651815 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.71 65.0 5.33e-01 98.1% 73.9%
3738592 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.70 64.0 5.43e-01 99.0% 78.8%
5001166 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.69 39.0 3.62e-01 88.5% 43.0%
153859 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.68 30.0 3.94e-01 80.8% 73.7%
3505268 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.66 58.0 5.28e-01 94.2% 97.0%
3412356 821.1.1.8 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › ANKLE2_3rd 0.64 52.0 5.01e-01 85.6% 93.0%
3987692 822.3.1.1 ↗ a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.57 29.0 3.40e-01 77.9% 68.6%
3879830 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.57 38.0 3.41e-01 86.5% 49.7%
3736231 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.57 38.0 3.59e-01 93.3% 56.8%
3811678 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.54 36.0 3.57e-01 85.6% 64.8%
3930427 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.52 28.0 3.43e-01 77.9% 83.1%