←Back to structures

154R

Euk-Vir

Cherax_quadricarinatus_iridovirus

154R__YP_009552435__Cherax_quadricarinatus_iridovirus__2035708

Identity

Accession:: YP_009552435 ↗
Protein ID:: 154R
Kingdom:: euk

Quality

71.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Decapodiridovirus› Cherax_quadricarinatus_iridovirus

TaxID: 2035708

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-133

PDB

D2 medium residues 207-272

PDB

Domain cluster: rep: late_transcription_factor_VLTF3__YP_008052476__Phaeocystis_globosa_virus__251749__D211-280

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04947.20 best	Pox_VLTF3	47.4	2.50e-12	100.0%	33.9%

D3 medium residues 305-368

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04947.20 best	Pox_VLTF3	56.5	3.90e-15	92.2%	32.7%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2de2A01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.68	51.0	3.67e-01	82.8%	64.4%
3p96A02	3.30.70.260	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain	0.59	45.0	4.20e-01	87.5%	64.3%
3ianA00	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.59	48.0	3.03e-01	89.1%	18.8%
2a4aA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.55	45.0	3.17e-01	100.0%	52.0%
7febA03	3.40.50.12790	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4	0.52	38.0	3.45e-01	95.3%	55.4%
2ymmA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.52	39.0	3.77e-01	81.2%	94.5%
3l23A00	3.20.20.150	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes	0.51	42.0	2.87e-01	98.4%	64.5%
1mt1B00	3.50.20.10	Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B	0.51	39.0	3.26e-01	82.8%	61.6%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4976844	303.1.1.1 ↗	a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC	0.62	42.0	3.12e-01	70.3%	59.4%
3520932	1075.1.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain	0.59	48.0	2.83e-01	92.2%	37.6%
3980369	304.15.1.0 ↗	a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain	0.59	46.0	3.99e-01	87.5%	76.7%
3934202	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.59	45.0	3.44e-01	85.9%	36.6%
4958616	304.128.1.0 ↗	a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB	0.57	42.0	4.05e-01	85.9%	68.0%
5073181	244.3.1.0 ↗	a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU	0.56	43.0	3.66e-01	85.9%	78.8%
None	—		0.51	45.0	2.86e-01	100.0%	41.2%
87888	303.1.1.1 ↗	a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC	0.51	40.0	3.00e-01	85.9%	57.9%
3924550	4026.1.1.0 ↗	a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145)	0.50	34.0	2.67e-01	70.3%	74.8%