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175R

Euk-Vir

Cherax_quadricarinatus_iridovirus

175R__YP_009552456__Cherax_quadricarinatus_iridovirus__2035708

Identity

Accession:
YP_009552456 ↗
Protein ID:
175R
Kingdom:
euk

Quality

61.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Decapodiridovirus› Cherax_quadricarinatus_iridovirus

TaxID: 2035708

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 196-248
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w5qA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.62 43.0 3.63e-01 83.0% 41.9%
2i50A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 48.0 3.83e-01 94.3% 60.7%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 38.0 3.69e-01 73.6% 71.4%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.53 44.0 4.06e-01 98.1% 93.2%
3siqA00 1.10.1170.10 Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 0.53 37.0 3.04e-01 75.5% 62.1%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.52 36.0 3.33e-01 75.5% 74.7%
2kv3A00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.50 38.0 3.07e-01 94.3% 65.6%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3808540 376.1.6.9 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › PF26200 0.88 59.0 4.11e-01 71.7% 24.7%
3937591 376.1.4.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.87 57.0 5.67e-01 73.6% 65.5%
3314132 376.1.6.10 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR, PF26200 0.87 61.0 4.27e-01 75.5% 26.0%
3901193 376.1.4.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.86 61.0 4.73e-01 75.5% 37.1%
3566936 376.1.4.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.85 60.0 5.55e-01 75.5% 60.0%
3467249 376.1.4.4 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › PF26200 0.85 57.0 5.29e-01 71.7% 56.9%
3406961 376.1.6.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 0.85 59.0 5.52e-01 75.5% 60.0%
3784620 376.1.4.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.84 56.0 5.60e-01 73.6% 67.3%
3907479 376.1.6.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain 0.84 57.0 5.05e-01 71.7% 53.3%
3748179 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.83 57.0 4.69e-01 71.7% 44.4%
3270748 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.83 55.0 5.15e-01 75.5% 56.9%
3891437 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.81 55.0 5.50e-01 73.6% 69.1%
3846875 376.1.4.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.80 55.0 5.11e-01 73.6% 58.5%
3873719 376.1.4.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.80 58.0 5.50e-01 77.4% 66.7%
3686965 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.79 54.0 5.38e-01 71.7% 74.5%
3724438 376.1.4.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.78 55.0 5.18e-01 77.4% 61.5%
4881936 376.1.4.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.77 52.0 4.72e-01 71.7% 55.6%
3238220 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.76 52.0 4.85e-01 73.6% 58.5%
3630907 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.74 50.0 4.73e-01 71.7% 61.5%
3873729 376.1.4.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.73 51.0 4.63e-01 73.6% 57.1%
5047885 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 50.0 5.31e-01 100.0% 86.7%
4943134 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 38.0 4.55e-01 73.6% 80.0%
3488426 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.69 40.0 4.34e-01 73.6% 68.9%
5053416 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.64 38.0 4.15e-01 75.5% 71.1%
3507653 375.4.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like 0.61 49.0 3.46e-01 88.7% 88.3%
3437513 376.1.4.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.58 41.0 3.91e-01 73.6% 76.9%
4150519 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.58 46.0 3.71e-01 96.2% 61.0%
4854353 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.57 33.0 3.36e-01 75.5% 56.6%
3577814 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.53 40.0 3.80e-01 92.5% 84.3%
D2 medium residues 109-189
PDB
D3 medium residues 268-411
PDB