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1a_protein

Euk-Vir

Gayfeather_mild_mottle_virus

1a_protein__YP_002640500__Gayfeather_mild_mottle_virus__578305

Identity

Accession:: YP_002640500 ↗
Protein ID:: 1a_protein
Kingdom:: euk

Quality

74.2 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Bromoviridae› Cucumovirus› Gayfeather_mild_mottle_virus

TaxID: 578305

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 95-238_264-321

PDB

Domain cluster: rep: methyltransferase_helicase__YP_009104367__Lilac_leaf_chlorosis_virus__722755__D97-204_268-298

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01660.23 best	Vmethyltransf	142.5	2.20e-41	100.0%	60.1%
PF19223.6	Chropara_Vmeth	27.2	3.00e-06	83.7%	34.6%

D2 high residues 341-492

PDB

D3 high residues 578-690

PDB

Domain cluster: rep: replication-associated_polyprotein_1a__YP_009165996__Privet_ringspot_virus__2169960__D691-782

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12503.14 best	CMV_1a_C	110.5	4.50e-32	73.5%	92.9%
PF12467.14	CMV_1a	33.4	7.40e-08	24.8%	15.2%

D4 high residues 696-835

PDB

Domain cluster: rep: KX578043.1__AOT27930.1__X__00015__D87-267

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01443.25 best	Viral_helicase1	75.0	1.10e-20	92.9%	46.9%
PF13604.13	AAA_30	28.4	1.80e-06	89.3%	59.2%

D5 high residues 842-986

PDB

Domain cluster: rep: TGB1_protein__NP_619560__Garlic_latent_virus__12458__D129-228

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01443.25 best	Viral_helicase1	47.7	2.50e-12	84.8%	40.8%

D6 medium residues 32-94

PDB

Domain cluster: representative

CATH (28)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3h5oA02	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.66	39.0	2.95e-01	95.2%	25.7%
2f7lA02	3.40.120.10	Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	0.60	44.0	3.66e-01	82.5%	80.3%
4ncbA05	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.59	44.0	3.47e-01	82.5%	82.3%
2h3hA01	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.59	44.0	3.42e-01	82.5%	79.1%
1gdhA01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.58	42.0	3.47e-01	81.0%	95.3%
1gtkA02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.56	38.0	3.31e-01	71.4%	65.0%
4j1qA00	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.56	41.0	2.57e-01	82.5%	29.0%
1wu7A03	3.40.50.800	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain	0.55	43.0	3.84e-01	88.9%	99.0%
4jgiB02	3.40.50.280	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain	0.55	42.0	3.49e-01	87.3%	98.4%
3ikhA00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.55	45.0	2.94e-01	92.1%	89.2%
1w25A01	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.54	41.0	3.21e-01	82.5%	83.0%
4nimA00	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.54	41.0	2.89e-01	87.3%	85.4%
2kx7A00	3.40.50.11620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase RcsD, RcsD-ABL domain	0.54	40.0	3.41e-01	82.5%	83.8%
2xdqA03	3.40.50.1980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain	0.54	41.0	3.41e-01	87.3%	77.4%
6yttA02	3.40.50.2030	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.53	43.0	3.26e-01	93.7%	98.8%
1edzA02	3.40.50.10860	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1	0.53	42.0	3.39e-01	88.9%	79.4%
1b1xA03	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.53	40.0	2.97e-01	85.7%	78.4%
1qo0D01	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.52	38.0	3.18e-01	82.5%	89.8%
4nicA00	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.52	37.0	3.16e-01	79.4%	95.7%
3ibtA01	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.52	40.0	3.02e-01	92.1%	93.3%
2c7yA00	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.52	39.0	2.47e-01	85.7%	50.9%
3tmgA02	3.40.190.100	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Glycine betaine-binding periplasmic protein; domain 2	0.52	35.0	3.01e-01	71.4%	67.0%
1mdbA01	3.40.50.980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.51	41.0	3.26e-01	96.8%	82.9%
6ecpB01	3.40.50.10860	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1	0.51	38.0	2.97e-01	81.0%	82.1%
2csuA03	3.40.50.261	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains	0.51	36.0	2.81e-01	79.4%	89.8%
2qxyA00	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.51	37.0	3.15e-01	82.5%	99.2%
4d9gA02	3.40.50.1100	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.50	43.0	3.59e-01	100.0%	70.6%
3mw8A01	3.40.50.10090	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.50	37.0	3.12e-01	82.5%	100.0%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4946402	2006.1.3.11 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim	0.58	44.0	3.21e-01	84.1%	92.2%
1295874	2003.1.1.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains	0.56	41.0	3.16e-01	82.5%	74.7%
3740636	2006.1.3.11 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TOP6A-Spo11_Toprim	0.54	39.0	2.97e-01	81.0%	96.5%
2527000	7523.1.1.0 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II	0.54	38.0	3.08e-01	76.2%	83.1%
4953405	7523.1.1.6 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Porphobil_deam	0.53	36.0	3.22e-01	71.4%	68.4%
4964185	7571.1.1.1 ↗	a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N	0.51	37.0	2.71e-01	81.0%	87.1%
3648473	323.1.1.3 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding	0.51	39.0	2.99e-01	88.9%	86.3%
3305892	323.1.1.3 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding	0.51	38.0	2.97e-01	87.3%	84.1%
3763514	7523.1.1.2 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Transferrin	0.51	40.0	2.90e-01	87.3%	76.9%
3739788	2007.1.3.1 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg	0.51	39.0	3.08e-01	87.3%	84.6%
4033946	323.1.1.3 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding	0.51	40.0	3.18e-01	95.2%	67.7%