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20.3_kDa

Euk-Vir

Spodoptera_frugiperda_ascovirus_1a

20.3_kDa__YP_762427__Spodoptera_frugiperda_ascovirus_1a__113370

Identity

Accession:
YP_762427 ↗
Protein ID:
20.3_kDa
Kingdom:
euk

Quality

77.3 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Ascoviridae› Ascovirus› Spodoptera_frugiperda_ascovirus_1a

TaxID: 113370

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-66_79-107
PDB
Domain cluster: rep: hypothetical_protein_CaLGV017__YP_008719965__Clostera_anastomosis_granulovirus_Henan__1986291__D2-108
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.71 65.0 6.42e-01 100.0% 93.1%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.67 60.0 5.76e-01 100.0% 87.7%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 30.0 2.88e-01 81.9% 36.4%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 43.0 4.04e-01 80.9% 91.4%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 33.0 3.94e-01 91.5% 93.5%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 29.0 3.18e-01 88.3% 64.0%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.53 41.0 3.59e-01 81.9% 87.1%
2e9hA01 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.53 45.0 4.31e-01 97.9% 93.8%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 45.0 3.18e-01 97.9% 88.2%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3163642 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.78 68.0 6.42e-01 100.0% 80.0%
3968916 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.75 64.0 6.19e-01 100.0% 81.9%
3516620 101.1.9.107 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PF25867 0.75 63.0 6.32e-01 90.4% 100.0%
3529465 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.74 66.0 6.38e-01 96.8% 91.4%
3978692 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.73 66.0 5.62e-01 100.0% 69.3%
3525074 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.72 60.0 6.18e-01 90.4% 100.0%
3798287 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 66.0 6.58e-01 100.0% 97.9%
3888996 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.70 63.0 6.31e-01 100.0% 97.9%
4003595 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.69 60.0 5.44e-01 95.7% 70.5%
3932937 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.69 61.0 6.14e-01 97.9% 97.9%
4954530 101.1.9.143 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.68 58.0 5.51e-01 96.8% 92.2%
3480621 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.68 61.0 6.09e-01 100.0% 97.9%
5055629 3604.1.1.0 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.63 33.0 4.02e-01 85.1% 78.3%
4998593 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.63 54.0 5.05e-01 96.8% 76.5%
3400699 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 55.0 5.35e-01 100.0% 98.1%
5038962 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 26.0 3.57e-01 80.9% 82.2%
3214527 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.59 53.0 4.87e-01 100.0% 80.0%
3717655 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.59 29.0 2.92e-01 80.9% 44.0%
3497653 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 30.0 2.74e-01 80.9% 36.1%
3786329 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.57 33.0 3.96e-01 97.9% 94.5%
3468948 904.1.1.5 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › PLATZ 0.55 48.0 4.06e-01 95.7% 83.9%
5036255 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.55 45.0 4.31e-01 93.6% 82.6%
3433555 904.1.1.5 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › PLATZ 0.55 36.0 3.74e-01 78.7% 71.6%
3963913 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 41.0 3.58e-01 80.9% 71.4%
5063311 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.53 25.0 3.23e-01 80.9% 84.4%
5048797 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.52 33.0 3.34e-01 81.9% 62.1%
3923142 7579.1.1.1 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase 0.52 42.0 2.63e-01 89.4% 78.2%
3838045 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 21.0 3.26e-01 78.7% 100.0%