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21_kDa_protein

Euk-Vir

Rehmannia_virus_1

21_kDa_protein__YP_009552011__Rehmannia_virus_1__2316740

Identity

Accession:
YP_009552011 ↗
Protein ID:
21_kDa_protein
Kingdom:
euk

Quality

80.3 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Closterovirus› Rehmannia_virus_1

TaxID: 2316740

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-94
PDB
Domain cluster: rep: p21__YP_009162629__Tobacco_virus_1__1692045__D7-93
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11757.14 best RSS_P20 68.1 1.00e-18 96.6% 90.4%
D2 high residues 98-172
PDB
Domain cluster: rep: P20_protein__YP_009552001__Arracacha_virus_1__2201042__D98-177
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11479.14 best Suppressor_P21 67.9 9.90e-19 100.0% 88.8%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cwoA02 1.10.1200.170 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › RNA silencing suppressor P21, C-terminal domain 0.95 90.0 8.69e-01 100.0% 94.0%
7qv0F01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.64 43.0 4.27e-01 70.7% 98.8%
1mkiA02 1.10.1500.10 Mainly Alpha › Orthogonal Bundle › Probable Glutaminase Ybgj; Chain: A, domain 2 › 0.54 47.0 3.91e-01 98.7% 94.9%
2n6yA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.54 45.0 4.49e-01 96.0% 91.3%
6mrfA00 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.54 44.0 3.14e-01 92.0% 82.6%
3cymA03 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.54 36.0 3.52e-01 97.3% 60.2%
2mhhA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 43.0 4.03e-01 100.0% 72.9%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 4.12e-01 96.0% 78.6%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.52 45.0 4.24e-01 100.0% 84.0%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.52 42.0 3.56e-01 88.0% 100.0%
3x1oA00 1.20.120.1790 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 45.0 3.64e-01 100.0% 67.8%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.51 39.0 3.98e-01 94.7% 83.8%
4h2uD00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.50 42.0 4.19e-01 98.7% 92.3%
1yhsA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 44.0 3.36e-01 100.0% 86.7%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
223714 3580.1.1.1 ↗ alpha arrays › RNA silencing suppressor p21 C-terminal domain › RNA silencing suppressor p21 C-terminal domain › RNA silencing suppressor p21 C-terminal domain › Suppressor_P21 0.95 90.0 8.65e-01 100.0% 92.9%
3640621 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.61 49.0 4.61e-01 96.0% 72.6%
4011395 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.58 47.0 4.39e-01 97.3% 71.0%
4930676 102.3.1.1 ↗ alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha 0.57 40.0 3.78e-01 73.3% 90.0%
3775354 181.1.1.6 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › PCM1_C 0.56 44.0 3.87e-01 88.0% 65.2%
3995800 193.1.1.7 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › IFT81_CH 0.55 46.0 3.87e-01 94.7% 74.8%
4146415 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.55 42.0 3.89e-01 81.3% 83.2%
3914513 181.1.1.6 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › PCM1_C 0.55 43.0 3.83e-01 88.0% 65.2%
3575508 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 3.94e-01 90.7% 82.6%
3636754 101.1.2.466 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_MCM3_C 0.54 45.0 4.48e-01 94.7% 92.5%
1687176 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.54 45.0 4.49e-01 96.0% 91.3%
4015229 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.54 46.0 4.20e-01 94.7% 71.0%
4081626 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.54 39.0 3.82e-01 78.7% 78.8%
4224903 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.53 40.0 3.83e-01 78.7% 78.8%
3607555 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.53 38.0 3.83e-01 100.0% 76.2%
5073218 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 45.0 4.27e-01 100.0% 82.2%
4012728 132.1.1.0 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) 0.52 43.0 4.14e-01 98.7% 80.0%
5011766 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 3.68e-01 98.7% 81.9%
4360346 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.52 38.0 3.66e-01 77.3% 89.4%
4182024 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.52 42.0 4.34e-01 94.7% 98.6%
4136321 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.52 39.0 4.18e-01 90.7% 96.9%
3287937 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.52 42.0 4.09e-01 100.0% 81.2%
4471337 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.51 40.0 4.09e-01 97.3% 92.9%
4981204 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 4.09e-01 96.0% 98.9%
3201311 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.51 42.0 4.05e-01 93.3% 81.2%
3973793 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.51 42.0 2.77e-01 100.0% 25.9%
4017134 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.39e-01 88.0% 61.5%
4022568 101.1.2.596 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7892 0.51 42.0 3.43e-01 100.0% 66.7%
4128909 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.51 41.0 3.98e-01 98.7% 80.0%
4668975 132.1.1.0 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) 0.51 40.0 3.90e-01 97.3% 78.8%
3276654 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.50 42.0 2.90e-01 94.7% 49.5%
4118342 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.50 39.0 3.98e-01 89.3% 86.7%