←Back to structures

26.9-kDa_protein

Euk-Vir

Tetterwort_vein_chlorosis_virus

26.9-kDa_protein__YP_009507972__Tetterwort_vein_chlorosis_virus__1712389

Identity

Accession:: YP_009507972 ↗
Protein ID:: 26.9-kDa_protein
Kingdom:: euk

Quality

83.8 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Crinivirus› Tetterwort_vein_chlorosis_virus

TaxID: 1712389

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-120

PDB

Domain cluster: rep: p28__YP_009507959__Diodia_vein_chlorosis_virus__656520__D20-131

D2 high residues 125-228

PDB

Domain cluster: rep: p28__YP_009507959__Diodia_vein_chlorosis_virus__656520__D136-237

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4kwyA00	3.30.160.150	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain	0.60	41.0	3.73e-01	81.7%	52.6%
3loyA01	3.10.450.40	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.56	37.0	3.81e-01	82.7%	70.3%
2uvaG08	3.10.129.10	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase	0.55	45.0	3.28e-01	88.5%	43.0%
4ienA00	3.10.129.10	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase	0.54	48.0	4.24e-01	99.0%	87.7%
3b7kB01	3.10.129.10	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase	0.53	46.0	4.26e-01	99.0%	94.3%
3iuzA00	3.10.180.50	Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 ›	0.51	44.0	3.20e-01	97.1%	92.8%
3hl6A02	1.20.58.700	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	37.0	3.59e-01	99.0%	67.8%
4n30A00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.51	36.0	3.03e-01	72.1%	83.5%
6grrA02	3.10.450.40	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.51	35.0	3.63e-01	85.6%	75.2%
3hn5A02	2.60.40.2060	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.50	32.0	3.19e-01	87.5%	58.3%
4exrA01	3.10.450.40	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.50	31.0	3.41e-01	83.7%	77.8%
1s3rA03	3.40.30.40	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Perfringolysin	0.50	39.0	3.61e-01	81.7%	84.5%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5067760	283.1.1.0 ↗	a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase	0.63	39.0	4.21e-01	100.0%	72.2%
3455144	12.1.1.0 ↗	beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain	0.59	29.0	3.85e-01	81.7%	94.0%
3865029	4292.2.1.0 ↗	a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain	0.56	36.0	3.93e-01	97.1%	80.0%
4029699	243.1.1.0 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like	0.55	43.0	3.96e-01	84.6%	71.5%
4193792	7503.1.1.3 ↗	a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N	0.54	42.0	4.06e-01	81.7%	79.1%
3929878	864.1.1.0 ↗	a+b two layers › DLC › DLC › DLC	0.54	35.0	4.11e-01	95.2%	98.6%
4256745	4292.2.1.0 ↗	a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain	0.53	37.0	3.51e-01	97.1%	58.5%
3941173	864.1.1.0 ↗	a+b two layers › DLC › DLC › DLC	0.52	34.0	4.00e-01	85.6%	100.0%
5066490	3781.1.1.1 ↗	a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N	0.52	31.0	3.33e-01	78.8%	68.9%
3601482	5.1.4.17 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A,MMS1_N	0.51	39.0	2.30e-01	82.7%	19.9%