←Back to structures

29L_protein

Euk-Vir

Yaba-like_disease_virus

29L_protein__NP_073414__Yaba-like_disease_virus__132475

Identity

Accession:: NP_073414 ↗
Protein ID:: 29L_protein
Kingdom:: euk

Quality

77.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Yatapoxvirus› Yaba-like_disease_virus

TaxID: 132475

Cluster

View cluster (26 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-51_111-135

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04596.19 best	Pox_F15	59.2	5.10e-16	57.9%	30.7%

CATH (19)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1eq6A00	3.40.1000.10	Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich	0.65	55.0	4.15e-01	94.7%	72.5%
2wmfA03	2.60.220.10	Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal	0.63	47.0	3.98e-01	78.9%	71.4%
2p4bB02	3.30.200.100	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain	0.60	52.0	4.77e-01	94.7%	80.6%
4dzrA00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.58	49.0	3.92e-01	96.1%	91.4%
2ednA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.57	39.0	3.39e-01	71.1%	61.0%
1jsxA00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.57	48.0	3.62e-01	96.1%	76.2%
4g59C01	2.60.40.2920	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.56	40.0	3.63e-01	75.0%	70.9%
1mkfA02	2.60.40.1340	Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like	0.56	40.0	3.17e-01	77.6%	77.3%
2nrqA00	3.30.1440.10	Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5	0.56	49.0	4.02e-01	96.1%	74.5%
5tvfD00	3.60.90.10	Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase	0.54	46.0	3.19e-01	94.7%	84.1%
6ofsA04	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.54	37.0	2.84e-01	71.1%	42.4%
1s28A00	3.30.1460.10	Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, ›	0.53	46.0	3.86e-01	97.4%	93.1%
1shsA00	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	38.0	3.27e-01	75.0%	87.0%
1wqsA01	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.52	37.0	3.84e-01	76.3%	80.0%
4ekjA01	2.60.40.1500	Mainly Beta › Sandwich › Immunoglobulin-like › Glycosyl hydrolase domain; family 39	0.52	37.0	3.03e-01	77.6%	89.0%
4xt6A00	3.40.430.10	Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A	0.52	46.0	3.26e-01	100.0%	94.9%
2lpuA00	3.30.1460.50	Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, ›	0.51	42.0	3.53e-01	97.4%	90.5%
2esnA02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.51	42.0	3.82e-01	96.1%	68.5%
3ciaA01	2.60.40.1730	Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain	0.51	36.0	2.70e-01	73.7%	43.5%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3841571	331.18.1.0 ↗	a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc	0.66	46.0	3.43e-01	98.7%	30.6%
4952047	2003.1.5.24 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10	0.62	54.0	3.78e-01	96.1%	64.9%
4973410	881.1.1.0 ↗	a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like	0.62	52.0	4.16e-01	96.1%	80.6%
3741087	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.60	47.0	3.67e-01	86.8%	67.4%
5065935	242.1.1.7 ↗	a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3	0.58	39.0	4.00e-01	71.1%	70.7%
4587300	2003.1.5.25 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB	0.56	49.0	3.66e-01	100.0%	94.8%
3226067	864.1.1.0 ↗	a+b two layers › DLC › DLC › DLC	0.54	43.0	4.17e-01	100.0%	77.6%
4055542	241.1.1.3 ↗	a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT	0.54	47.0	3.98e-01	98.7%	83.8%
4861416	5.1.1.2 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › WD40	0.54	44.0	2.91e-01	94.7%	29.9%
4541704	207.2.1.58 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Chlam_PMP+ChlamPMP_M	0.52	36.0	2.18e-01	73.7%	19.7%
3262490	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.51	34.0	3.48e-01	73.7%	69.3%
4994004	328.5.1.1 ↗	a+b two layers › IF3-like › SirA-like › SirA-like › TusA	0.50	38.0	3.92e-01	82.9%	98.7%
3921108	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.50	42.0	2.82e-01	97.4%	22.2%
4030319	4015.1.1.1 ↗	alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1	0.50	34.0	2.30e-01	75.0%	17.7%

D2 medium residues 52-110_136-148

PDB

Domain cluster: rep: hypothetical_protein_YMTVg29L__NP_938285__Yaba_monkey_tumor_virus__38804__D52-102_135-148

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04596.19 best	Pox_F15	80.5	1.40e-22	83.3%	42.3%