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2B_protein

Euk-Vir

Sebokele_virus_1

2B_protein__YP_008119842__Sebokele_virus_1__1294177

Identity

Accession:
YP_008119842 ↗
Protein ID:
2B_protein
Kingdom:
euk

Quality

70.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-29
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e05B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 36.0 2.43e-01 96.6% 39.6%
2v3uA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 37.0 2.55e-01 86.2% 93.2%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 38.0 2.52e-01 75.9% 19.9%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947772 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.62 47.0 3.20e-01 100.0% 23.8%
3723242 109.4.1.64 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 0.58 41.0 2.41e-01 86.2% 8.9%
3509135 375.1.1.233 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_IFT122_C 0.55 37.0 3.08e-01 86.2% 37.3%