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2C

Euk-Vir

Pigeon_picornavirus_B

2C__YP_004564615__Pigeon_picornavirus_B__928289

Identity

Accession:: YP_004564615 ↗
Protein ID:: 2C
Kingdom:: euk

Quality

82.3 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Pigeon_picornavirus_B

TaxID: 928289

Cluster

View cluster (62 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-118

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2rkkA01	1.25.40.270	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1	0.75	53.0	4.79e-01	73.3%	56.4%
2uubT00	1.20.58.110	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20	0.72	55.0	5.99e-01	81.0%	100.0%
1sziA02	1.20.120.340	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS	0.69	51.0	4.87e-01	77.6%	75.2%
3qkyA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.66	59.0	4.61e-01	99.1%	94.8%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5056869	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.78	50.0	4.25e-01	87.1%	42.9%
5072280	4177.1.1.0 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like	0.77	60.0	4.84e-01	81.9%	44.2%
3731612	2004.1.1.567 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_23	0.76	61.0	3.64e-01	83.6%	49.9%
3211056	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.74	56.0	4.90e-01	79.3%	71.2%
3812652	3922.1.1.0 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3	0.73	52.0	4.33e-01	73.3%	70.8%
3497029	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.70	48.0	5.18e-01	74.1%	82.0%
1148735	109.4.1.1919 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_16, YfiO	0.66	59.0	4.61e-01	99.1%	94.8%
4000723	601.1.2.1 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Vinculin	0.65	46.0	4.06e-01	73.3%	56.6%
4030332	604.7.1.0 ↗	alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A	0.65	48.0	3.66e-01	79.3%	31.9%
3940161	601.1.2.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608)	0.64	46.0	4.02e-01	75.0%	57.1%
4667176	3755.3.1.517 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF29650	0.62	55.0	4.30e-01	98.3%	57.3%
3968993	109.4.1.637 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2339	0.56	42.0	3.11e-01	79.3%	66.4%
5043886	3755.3.1.637 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121	0.56	44.0	3.88e-01	83.6%	70.6%
3706701	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.52	43.0	3.65e-01	87.1%	67.6%

D2 high residues 125-329

PDB

Domain cluster: rep: replication_associated_protein__YP_009345107__Amphibola_crenata_associated_bacilladnavirus_1__1941435__D302-478

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00910.29 best	RNA_helicase	99.2	2.60e-28	49.3%	99.1%