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2C

Euk-Vir

Bat_picornavirus_3

2C__YP_004782537__Bat_picornavirus_3__1074865

Identity

Accession:
YP_004782537 ↗
Protein ID:
2C
Kingdom:
euk

Quality

85.7 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Bat_picornavirus_3

TaxID: 1074865

Cluster

View cluster (62 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-119
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gl2B00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 55.0 5.74e-01 75.2% 82.6%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.73 50.0 4.46e-01 70.1% 72.7%
3evyA00 1.20.58.910 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 46.0 5.25e-01 70.1% 100.0%
4jioA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.64 43.0 3.83e-01 70.9% 49.1%
2pfdA03 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.64 49.0 4.13e-01 82.1% 54.2%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 48.0 4.12e-01 80.3% 55.9%
4hkaA01 1.20.58.480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 45.0 3.38e-01 78.6% 92.5%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 43.0 3.67e-01 74.4% 62.4%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.58 43.0 3.71e-01 77.8% 76.0%
5ko4A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.56 34.0 3.63e-01 70.1% 69.3%
1sziA02 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.55 41.0 3.93e-01 79.5% 75.2%
2qvaA01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.52 41.0 4.00e-01 83.8% 92.2%
3dcfA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 38.0 3.58e-01 76.9% 97.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4475763 3755.1.1.11 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › She9_MDM33 0.81 54.0 4.42e-01 78.6% 39.0%
3611166 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 56.0 4.66e-01 78.6% 72.5%
3923558 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.74 54.0 4.63e-01 78.6% 48.1%
3771046 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.74 55.0 3.46e-01 78.6% 20.3%
4178100 604.1.1.241 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27734 0.72 54.0 4.13e-01 77.8% 37.3%
3889547 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.71 53.0 4.52e-01 78.6% 65.3%
3661727 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.70 55.0 4.50e-01 82.1% 51.2%
3498203 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 55.0 4.45e-01 84.6% 60.9%
4018888 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.69 55.0 3.82e-01 85.5% 73.8%
3607831 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.67 48.0 5.15e-01 75.2% 100.0%
3879381 603.2.1.1 ↗ alpha bundles › STAT-like › STAT › STAT › STAT_alpha 0.66 47.0 4.24e-01 72.6% 74.8%
4382701 109.4.1.1379 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30880 0.66 46.0 3.09e-01 72.6% 84.3%
3521675 109.4.1.102 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › WAPL 0.66 51.0 3.25e-01 82.1% 17.3%
3175082 109.4.1.1379 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30880 0.66 48.0 3.17e-01 78.6% 18.9%
4297121 3755.3.1.46 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › She9_MDM33 0.65 48.0 3.96e-01 78.6% 43.2%
3325976 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 55.0 4.69e-01 92.3% 93.1%
3934654 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.64 45.0 3.94e-01 73.5% 65.0%
3301922 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 53.0 3.39e-01 89.7% 38.8%
3713724 109.4.1.1362 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG5_C 0.64 50.0 3.65e-01 83.8% 63.5%
3454604 1065.1.1.1 ↗ alpha bundles › SPX domain › SPX domain › SPX domain › SPX 0.64 53.0 4.65e-01 88.9% 78.8%
3358888 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.63 53.0 5.51e-01 89.7% 95.5%
3504942 5086.1.1.107 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Dcst2 0.62 46.0 4.18e-01 77.8% 58.1%
4526844 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 49.0 4.30e-01 84.6% 74.9%
3368348 604.3.1.1 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG 0.61 50.0 4.79e-01 88.0% 84.4%
3273401 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 47.0 3.88e-01 83.8% 87.8%
4289864 601.25.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain 0.59 42.0 3.84e-01 72.6% 61.3%
4974533 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.57 41.0 3.90e-01 73.5% 79.3%
D2 high residues 126-329
PDB
Domain cluster: rep: replication_associated_protein__YP_009345107__Amphibola_crenata_associated_bacilladnavirus_1__1941435__D302-478
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00910.29 best RNA_helicase 113.7 8.10e-33 49.5% 99.1%