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2C
Euk-VirBat_picornavirus_1
2C__YP_004782551__Bat_picornavirus_1__1074863
Identity
- Accession:
- YP_004782551 ↗
- Protein ID:
- 2C
- Kingdom:
- euk
Quality
81.4
mean pLDDT
Taxonomy
TaxID: 1074863
Cluster
View cluster (62 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 46-123
Domain cluster:
rep: 2C__YP_005352651__Canine_picornavirus__1196647__D42-117
D2
medium
residues 128-251_314-336
Domain cluster:
rep: replication_associated_protein__YP_009345107__Amphibola_crenata_associated_bacilladnavirus_1__1941435__D302-478
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00910.29 best | RNA_helicase | 105.0 | 4.10e-30 | 68.7% | 99.1% |
D3
medium
residues 252-313
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nutB02 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.66 | 30.0 | 3.06e-01 | 98.4% | 41.9% |
| 4e2xA01 | 6.20.50.110 | Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain | 0.52 | 39.0 | 4.22e-01 | 93.5% | 96.2% |
| 1y8fA00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.50 | 33.0 | 3.64e-01 | 100.0% | 84.3% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2392267 | 2004.1.1.55 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase | 0.95 | 91.0 | 6.05e-01 | 100.0% | 31.3% |
| 4812297 | 2004.1.1.55 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase | 0.88 | 82.0 | 5.59e-01 | 100.0% | 35.4% |
| 3257342 | 325.1.7.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl | 0.72 | 43.0 | 3.95e-01 | 96.8% | 46.3% |
| 3838045 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 31.0 | 3.85e-01 | 93.5% | 85.7% |
| 3718693 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 39.0 | 4.44e-01 | 96.8% | 93.3% |
| 3562153 | 5.1.3.147 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Beta-prop_ATRN-LZTR1 | 0.58 | 34.0 | 2.21e-01 | 96.8% | 11.4% |
| 3803106 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 39.0 | 4.50e-01 | 98.4% | 100.0% |
| 3583925 | 376.1.2.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 | 0.54 | 37.0 | 3.19e-01 | 100.0% | 46.3% |
| 3403430 | 376.1.2.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 | 0.54 | 36.0 | 3.78e-01 | 100.0% | 76.4% |
| 3810662 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.50 | 43.0 | 3.25e-01 | 100.0% | 58.1% |