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2C

Euk-Vir

tottorivirus_A1

2C__YP_010088094__tottorivirus_A1__1780058

Identity

Accession:: YP_010088094 ↗
Protein ID:: 2C
Kingdom:: euk

Quality

78.1 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Tottorivirus› tottorivirus_A1

TaxID: 1780058

Cluster

View cluster (62 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-91

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4mtxD00	1.10.287.130	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain	0.81	71.0	6.98e-01	95.6%	100.0%
2dq0A01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.81	59.0	5.51e-01	86.7%	63.6%
1uurA01	1.20.58.240	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1	0.78	54.0	5.07e-01	72.2%	86.4%
2rd0B00	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.78	68.0	5.84e-01	95.6%	61.9%
1wa8A00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.73	52.0	5.10e-01	74.4%	69.7%
3na7A00	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.73	63.0	4.62e-01	94.4%	40.5%
4aflA00	6.10.140.1740	Special › Helix non-globular › Helix Hairpins ›	0.63	46.0	4.45e-01	76.7%	73.5%
3axjB01	1.20.58.190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1	0.62	53.0	4.43e-01	94.4%	66.5%

ECOD (19)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3731259	5042.1.1.1 ↗	extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA	0.90	62.0	4.75e-01	70.0%	35.2%
3231243	4177.1.1.10 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › GMIP-like_FCH	0.84	75.0	5.13e-01	96.7%	29.7%
4516988	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.83	70.0	5.98e-01	95.6%	58.6%
3702176	603.1.1.100 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017	0.78	60.0	5.14e-01	81.1%	52.1%
4883924	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.77	61.0	6.41e-01	83.3%	95.0%
3702347	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.77	65.0	5.16e-01	91.1%	78.9%
3579748	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.76	61.0	4.92e-01	86.7%	74.7%
3264546	904.1.1.0 ↗	few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain	0.75	66.0	5.81e-01	95.6%	68.5%
3262083	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.74	50.0	4.78e-01	70.0%	61.0%
3883768	5086.1.1.101 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › SH3BP5	0.72	62.0	5.58e-01	94.4%	69.6%
4001186	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.72	62.0	4.86e-01	95.6%	63.2%
3611289	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.70	61.0	5.20e-01	95.6%	63.4%
4581983	5086.1.1.13 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › T3SSipB	0.70	56.0	4.83e-01	86.7%	60.0%
3671258	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.70	60.0	5.32e-01	95.6%	66.9%
3423917	601.4.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains	0.69	48.0	4.05e-01	73.3%	41.9%
3581368	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.68	57.0	4.84e-01	92.2%	75.3%
4968655	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.67	52.0	4.36e-01	83.3%	49.0%
3457659	192.15.1.73 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › GrpE	0.66	52.0	4.79e-01	95.6%	65.8%
4026054	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.65	52.0	4.38e-01	87.8%	50.0%

D2 high residues 109-312

PDB

Domain cluster: rep: replication_associated_protein__YP_009345107__Amphibola_crenata_associated_bacilladnavirus_1__1941435__D302-478

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00910.29 best	RNA_helicase	97.6	8.20e-28	50.0%	100.0%