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2C_protein

Euk-Vir

Rhimavirus_A

2C_protein__YP_009553698__Rhimavirus_A__2218594

Identity

Accession:
YP_009553698 ↗
Protein ID:
2C_protein
Kingdom:
euk

Quality

79.4 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Rhimavirus_A

TaxID: 2218594

Cluster

View cluster (62 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 125-333
PDB
Domain cluster: rep: replication_associated_protein__YP_009345107__Amphibola_crenata_associated_bacilladnavirus_1__1941435__D302-478
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00910.29 best RNA_helicase 94.3 8.60e-27 48.8% 100.0%
PF00004.36 AAA 22.1 2.40e-04 34.9% 42.0%
D2 medium residues 2-117
PDB
Domain cluster: rep: 2C__YP_003853294__Passerivirus_A1__871699__D1-117
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hwdD00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.73 54.0 6.05e-01 80.2% 98.9%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.72 48.0 5.66e-01 92.2% 95.2%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 49.0 4.86e-01 73.3% 100.0%
4x5mA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.69 46.0 5.29e-01 89.7% 91.9%
2qgmA03 1.20.1440.30 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain 0.68 50.0 5.07e-01 97.4% 77.6%
3iq1B00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.67 54.0 4.79e-01 83.6% 99.4%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.67 43.0 4.13e-01 71.6% 56.5%
2vxxA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 54.0 4.67e-01 85.3% 90.7%
4qndA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.66 46.0 5.04e-01 91.4% 86.6%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.65 42.0 4.93e-01 88.8% 94.9%
1tjoB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.65 54.0 4.65e-01 87.9% 90.3%
1zs3A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 52.0 4.51e-01 84.5% 91.8%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.61 49.0 5.09e-01 84.5% 97.2%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.61 50.0 5.10e-01 92.2% 99.1%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.61 45.0 4.70e-01 77.6% 86.8%
3ma5A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 41.0 4.65e-01 84.5% 92.2%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.58 48.0 4.56e-01 87.1% 78.5%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.58 43.0 3.52e-01 77.6% 77.9%
2katA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 44.0 4.44e-01 82.8% 80.0%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.57 40.0 3.93e-01 97.4% 67.7%
3q15B00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 49.0 3.63e-01 100.0% 97.6%
2hroA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.56 43.0 4.24e-01 82.8% 80.5%
4bujE03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.56 47.0 3.79e-01 91.4% 60.5%
4gmnA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 50.0 3.22e-01 100.0% 37.7%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.51 43.0 3.99e-01 96.6% 79.9%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3724523 4121.1.1.7 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 0.78 59.0 4.06e-01 78.4% 46.7%
1411677 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.72 48.0 5.66e-01 92.2% 95.2%
5055868 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.72 46.0 5.66e-01 91.4% 100.0%
3575213 109.4.1.649 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4807 0.72 51.0 4.78e-01 73.3% 88.6%
4959463 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.70 47.0 5.62e-01 93.1% 98.8%
4929003 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.70 49.0 5.48e-01 89.7% 91.1%
3974601 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.69 46.0 4.76e-01 80.2% 71.8%
5024278 3758.2.1.1 ↗ alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.69 48.0 4.12e-01 71.6% 95.6%
3791287 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.69 47.0 5.37e-01 91.4% 91.1%
5029393 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.69 47.0 5.42e-01 90.5% 92.1%
3256571 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.69 47.0 5.18e-01 94.8% 85.3%
3616226 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.69 48.0 4.77e-01 93.1% 69.2%
3798925 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.68 48.0 5.47e-01 89.7% 97.6%
3810721 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.68 46.0 5.09e-01 93.1% 84.2%
3938941 109.4.1.649 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4807 0.68 51.0 4.88e-01 76.7% 95.4%
3239689 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.68 47.0 4.97e-01 89.7% 79.0%
3365571 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.68 47.0 4.97e-01 89.7% 79.0%
3699643 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.68 48.0 5.50e-01 91.4% 98.8%
4025161 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.68 46.0 5.41e-01 87.1% 100.0%
3245192 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.68 47.0 5.43e-01 89.7% 97.6%
3495590 109.4.1.649 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4807 0.68 54.0 4.47e-01 84.5% 94.5%
3330676 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.67 47.0 5.31e-01 91.4% 92.2%
3244940 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.67 47.0 5.27e-01 90.5% 92.2%
4002622 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.67 47.0 4.97e-01 92.2% 80.0%
3256234 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.67 47.0 5.46e-01 91.4% 98.8%
3601017 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.66 46.0 5.32e-01 89.7% 97.6%
3600104 622.1.1.0 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.66 45.0 4.56e-01 95.7% 69.5%
3613274 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.65 56.0 4.55e-01 94.8% 65.9%
3472426 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.64 51.0 5.23e-01 90.5% 87.3%
3805429 3562.1.1.33 ↗ alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › ALMT 0.63 36.0 3.26e-01 73.3% 40.0%
2799599 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.63 37.0 4.17e-01 93.1% 76.7%
3245201 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.62 47.0 4.44e-01 83.6% 65.7%
3476280 5059.1.1.5 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA 0.61 47.0 3.85e-01 81.0% 81.0%
3797685 633.8.1.0 ↗ alpha bundles › Bromodomain-like › MAST3 pre-PK domain-like › MAST3 pre-PK domain-like 0.58 44.0 4.49e-01 97.4% 81.7%
1713334 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.58 48.0 4.83e-01 90.5% 87.2%
3781506 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.58 41.0 3.70e-01 72.4% 97.4%
3991215 109.4.1.649 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4807 0.58 49.0 4.26e-01 99.1% 60.1%
3436288 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.58 48.0 4.61e-01 90.5% 78.5%
3277303 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.57 42.0 3.60e-01 78.4% 79.3%
5035275 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.56 39.0 4.07e-01 79.3% 78.1%
4027582 603.1.1.120 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF846 0.56 47.0 4.64e-01 94.0% 85.8%
3403225 109.4.1.649 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4807 0.54 46.0 4.70e-01 99.1% 96.4%