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32_kDa_protein
Euk-VirGarlic_virus_X
32_kDa_protein__NP_044574__Garlic_virus_X__150284
Identity
- Accession:
- NP_044574 ↗
- Protein ID:
- 32_kDa_protein
- Kingdom:
- euk
Quality
66.6
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Tymovirales›
Alphaflexiviridae›
Allexivirus›
Garlic_virus_X
TaxID: 150284
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 197-280
Domain cluster:
rep: serine-rich_p40_protein__YP_004659203__Blackberry_virus_E__1043184__D268-350
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05549.17 best | Allexi_40kDa | 136.8 | 1.50e-39 | 100.0% | 31.0% |
D2
medium
residues 56-159
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05549.17 best | Allexi_40kDa | 124.9 | 6.50e-36 | 100.0% | 39.5% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7aalA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.82 | 75.0 | 5.45e-01 | 98.1% | 59.4% |
| 2cazC00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.75 | 46.0 | 5.62e-01 | 70.2% | 100.0% |
| 3rx6A00 | 1.20.58.1090 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer | 0.62 | 49.0 | 4.01e-01 | 82.7% | 64.2% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4519046 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.79 | 71.0 | 6.51e-01 | 99.0% | 75.6% |
| 4028242 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.79 | 68.0 | 6.38e-01 | 92.3% | 88.0% |
| 3862009 | 3755.3.1.293 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › TBCA_PH | 0.74 | 59.0 | 5.06e-01 | 86.5% | 54.4% |
| 4066758 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.72 | 50.0 | 5.08e-01 | 75.0% | 74.0% |
| 4223425 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.71 | 50.0 | 5.08e-01 | 76.9% | 73.3% |
| 3585439 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.70 | 59.0 | 4.39e-01 | 94.2% | 37.6% |
| 4074458 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.66 | 46.0 | 4.69e-01 | 75.0% | 74.0% |
| 4114191 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.59 | 41.0 | 4.17e-01 | 76.0% | 71.4% |