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38K
Euk-VirUrbanus_proteus_nucleopolyhedrovirus
38K__YP_009250064__Urbanus_proteus_nucleopolyhedrovirus__1675866
Identity
- Accession:
- YP_009250064 ↗
- Protein ID:
- 38K
- Kingdom:
- euk
Quality
81.4
mean pLDDT
Taxonomy
TaxID: 1675866
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-121
Domain cluster:
rep: 38k__YP_009513121__Agrotis_segetum_granulovirus__10464__D2-111
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05152.19 best | DUF705 | 72.2 | 7.40e-20 | 99.2% | 39.1% |
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l5kA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.68 | 56.0 | 5.09e-01 | 89.0% | 93.0% |
| 2dzmA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.68 | 32.0 | 4.02e-01 | 92.4% | 73.6% |
| 2amyA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.62 | 50.0 | 4.83e-01 | 89.0% | 99.3% |
| 7uuim01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 48.0 | 4.41e-01 | 84.7% | 84.2% |
| 6whjD00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.61 | 50.0 | 3.73e-01 | 90.7% | 91.0% |
| 3rf7A01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 44.0 | 3.79e-01 | 76.3% | 81.1% |
| 3rd5A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 48.0 | 3.77e-01 | 90.7% | 77.6% |
| 3oy2A01 | 3.40.50.11930 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 47.0 | 4.28e-01 | 89.0% | 97.5% |
| 2cjpA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 51.0 | 3.78e-01 | 100.0% | 95.9% |
| 2xmzA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 50.0 | 3.92e-01 | 98.3% | 98.5% |
| 7otsB01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 51.0 | 3.90e-01 | 100.0% | 92.9% |
| 5bovB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 51.0 | 3.84e-01 | 100.0% | 94.0% |
| 3ibtA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 52.0 | 4.39e-01 | 100.0% | 95.9% |
| 2fukA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 51.0 | 4.21e-01 | 100.0% | 89.0% |
| 1lnsA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 51.0 | 3.74e-01 | 100.0% | 72.9% |
| 4meaA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 51.0 | 3.73e-01 | 100.0% | 86.1% |
| 2zb4A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 45.0 | 4.01e-01 | 88.1% | 72.9% |
| 3sqlA02 | 3.40.50.10870 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycosyl hydrolase family 3 | 0.56 | 40.0 | 3.71e-01 | 73.7% | 96.1% |
| 4qgsA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 41.0 | 3.68e-01 | 76.3% | 88.8% |
| 4f0jA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 50.0 | 3.71e-01 | 100.0% | 92.0% |
| 3kxpA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 49.0 | 3.82e-01 | 99.2% | 94.8% |
| 5cmlA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 49.0 | 3.95e-01 | 100.0% | 93.3% |
| 2afrA00 | 3.40.50.10230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin biosynthesis CobH/CbiC, precorrin-8X methylmutase | 0.55 | 38.0 | 3.13e-01 | 70.3% | 74.5% |
| 1jg7A02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.55 | 44.0 | 3.98e-01 | 88.1% | 77.1% |
| 1vw4U00 | 3.30.1390.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 | 0.54 | 33.0 | 3.87e-01 | 73.7% | 87.8% |
| 2b4yA01 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.54 | 44.0 | 4.11e-01 | 89.8% | 92.1% |
| 5cz2C00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 38.0 | 3.51e-01 | 72.9% | 63.8% |
| 1bgwA02 | 3.40.50.670 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 47.0 | 4.20e-01 | 98.3% | 90.6% |
| 2x5dD02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.53 | 39.0 | 3.20e-01 | 78.8% | 65.0% |
| 7wgrA03 | 3.40.50.11610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain | 0.53 | 46.0 | 4.50e-01 | 96.6% | 100.0% |
| 6qmmA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 43.0 | 3.57e-01 | 89.8% | 74.9% |
| 3tejA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 47.0 | 3.41e-01 | 97.5% | 71.9% |
| 2qmxA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 32.0 | 3.59e-01 | 86.4% | 81.4% |
| 2jgdA04 | 3.40.50.11610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain | 0.52 | 47.0 | 4.27e-01 | 100.0% | 85.5% |
| 1d3yB02 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.52 | 46.0 | 3.83e-01 | 99.2% | 97.7% |
| 1h1lD03 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.52 | 45.0 | 4.34e-01 | 95.8% | 88.7% |
| 2p4zA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 43.0 | 3.34e-01 | 90.7% | 100.0% |
| 6n2nC03 | 3.40.50.920 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 44.0 | 4.56e-01 | 97.5% | 99.1% |
| 2o1sB03 | 3.40.50.920 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 46.0 | 4.55e-01 | 99.2% | 99.2% |
| 1ultB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.51 | 45.0 | 3.11e-01 | 99.2% | 84.7% |
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.51 | 38.0 | 4.11e-01 | 85.6% | 96.8% |
| 1asuA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 38.0 | 3.46e-01 | 89.8% | 58.0% |
| 3qpbF00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.50 | 44.0 | 3.51e-01 | 98.3% | 95.6% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3984532 | 2006.1.3.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › TraI_C | 0.65 | 34.0 | 3.71e-01 | 78.8% | 59.0% |
| 4964185 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.60 | 49.0 | 4.15e-01 | 89.8% | 89.0% |
| 4516235 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.59 | 53.0 | 4.03e-01 | 100.0% | 92.3% |
| 3208480 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.57 | 46.0 | 3.56e-01 | 88.1% | 94.6% |
| 143368 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.57 | 50.0 | 3.92e-01 | 98.3% | 98.5% |
| 3838443 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.57 | 46.0 | 4.56e-01 | 95.8% | 81.6% |
| 4243531 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.57 | 52.0 | 3.93e-01 | 100.0% | 96.1% |
| 3958561 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.57 | 49.0 | 4.16e-01 | 95.8% | 57.5% |
| 3468578 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.57 | 51.0 | 3.98e-01 | 100.0% | 86.8% |
| 5023468 | 7522.1.1.4 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PFOR_II | 0.56 | 46.0 | 4.85e-01 | 100.0% | 99.0% |
| 138048 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.56 | 49.0 | 3.82e-01 | 99.2% | 94.8% |
| 4930691 | 7522.1.1.0 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like | 0.55 | 45.0 | 4.70e-01 | 98.3% | 98.1% |
| 5017203 | 7522.1.1.0 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like | 0.54 | 48.0 | 4.87e-01 | 100.0% | 98.3% |
| 3241329 | 2011.1.1.12 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Nicastrin | 0.54 | 48.0 | 3.60e-01 | 100.0% | 76.8% |
| 4944209 | 7522.1.1.0 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like | 0.54 | 49.0 | 4.76e-01 | 99.2% | 91.5% |
| 3926267 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 37.0 | 3.43e-01 | 71.2% | 57.5% |
| 5036686 | 7522.1.1.0 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like | 0.53 | 46.0 | 4.58e-01 | 99.2% | 91.7% |
| 4385053 | 7522.1.1.6 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PF30897 | 0.53 | 48.0 | 4.33e-01 | 100.0% | 74.5% |
| 4995481 | 7522.1.1.6 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PF30897 | 0.53 | 48.0 | 4.47e-01 | 100.0% | 84.0% |
| 5049470 | 7522.1.1.6 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PF30897 | 0.53 | 47.0 | 4.27e-01 | 100.0% | 81.2% |
| 4318842 | 7522.1.1.3 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › OxoGdeHyase_C | 0.53 | 47.0 | 4.44e-01 | 98.3% | 95.0% |
| 4974714 | 7522.1.1.0 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like | 0.53 | 47.0 | 4.37e-01 | 100.0% | 77.3% |
| 4952716 | 7522.1.1.0 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like | 0.52 | 47.0 | 4.55e-01 | 100.0% | 91.1% |
| 5051500 | 7523.1.1.5 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PDT | 0.52 | 32.0 | 3.54e-01 | 86.4% | 78.9% |
| 4298485 | 7522.1.1.8 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PF31012 | 0.52 | 46.0 | 4.53e-01 | 100.0% | 93.1% |
| 4275547 | 7522.1.1.0 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like | 0.52 | 47.0 | 4.55e-01 | 100.0% | 96.9% |
| 4943971 | 7522.1.1.0 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like | 0.52 | 47.0 | 4.29e-01 | 100.0% | 80.0% |
| 5053073 | 7522.1.1.0 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like | 0.52 | 43.0 | 4.47e-01 | 98.3% | 100.0% |
| 5068253 | 7522.1.1.0 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like | 0.52 | 45.0 | 4.38e-01 | 98.3% | 86.9% |
| 5065743 | 7522.1.1.0 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like | 0.51 | 46.0 | 4.18e-01 | 100.0% | 81.2% |
| 3241501 | 2007.5.1.23 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › SGNH | 0.51 | 46.0 | 3.53e-01 | 100.0% | 86.4% |
| 5027120 | 7522.1.1.0 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like | 0.51 | 46.0 | 4.18e-01 | 100.0% | 75.6% |
| 5049601 | 7522.1.1.4 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PFOR_II | 0.51 | 45.0 | 4.28e-01 | 98.3% | 84.3% |
| 3783753 | 7522.1.1.0 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like | 0.51 | 45.0 | 4.34e-01 | 99.2% | 85.2% |
| 5017188 | 7522.1.1.6 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PF30897 | 0.51 | 46.0 | 4.13e-01 | 100.0% | 73.9% |
| 4564098 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.51 | 37.0 | 3.69e-01 | 99.2% | 74.2% |
| 5037551 | 7522.1.1.0 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like | 0.51 | 45.0 | 4.32e-01 | 98.3% | 85.9% |
| 4675215 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 34.0 | 3.56e-01 | 70.3% | 76.2% |
D2
high
residues 133-317
Domain cluster:
rep: 38k__YP_008378302__Hemileuca_sp._nucleopolyhedrovirus__1367203__D128-200_219-315
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05152.19 best | DUF705 | 187.0 | 8.20e-55 | 100.0% | 55.3% |