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38K_protein
Euk-VirOryctes_rhinoceros_nudivirus
38K_protein__YP_002321398__Oryctes_rhinoceros_nudivirus__92521
Identity
- Accession:
- YP_002321398 ↗
- Protein ID:
- 38K_protein
- Kingdom:
- euk
Quality
73.3
mean pLDDT
Taxonomy
TaxID: 92521
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-52_97-149
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ogwA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.67 | 60.0 | 4.99e-01 | 100.0% | 80.4% |
| 2cb0A02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.66 | 59.0 | 4.91e-01 | 100.0% | 75.7% |
| 3kb6A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.66 | 60.0 | 5.19e-01 | 100.0% | 89.3% |
| 5dclA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 58.0 | 5.25e-01 | 100.0% | 97.4% |
| 3kjxA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 58.0 | 5.02e-01 | 100.0% | 90.2% |
| 3kcnB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 58.0 | 4.97e-01 | 100.0% | 85.4% |
| 3qkiB01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.64 | 57.0 | 3.74e-01 | 100.0% | 43.9% |
| 2q5cA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 57.0 | 5.51e-01 | 100.0% | 95.9% |
| 4xltA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 57.0 | 4.99e-01 | 100.0% | 97.7% |
| 2amlB01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.63 | 55.0 | 4.18e-01 | 100.0% | 60.6% |
| 1di0A00 | 3.40.50.960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase | 0.63 | 55.0 | 4.64e-01 | 100.0% | 95.3% |
| 1ozhA02 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.62 | 55.0 | 4.57e-01 | 100.0% | 82.5% |
| 2b4aA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 54.0 | 4.94e-01 | 100.0% | 96.6% |
| 4d02A02 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.62 | 53.0 | 4.61e-01 | 100.0% | 98.6% |
| 3jvdB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 54.0 | 4.88e-01 | 100.0% | 88.5% |
| 5t3oA02 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 48.0 | 4.10e-01 | 83.7% | 77.0% |
| 3jteA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 53.0 | 4.76e-01 | 100.0% | 91.3% |
| 2panA02 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.61 | 54.0 | 4.40e-01 | 100.0% | 82.0% |
| 2o1sA02 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.61 | 51.0 | 4.07e-01 | 93.0% | 85.3% |
| 3v46A00 | 3.40.50.11990 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › RNA polymerase II accessory factor, Cdc73 C-terminal domain | 0.61 | 53.0 | 4.41e-01 | 100.0% | 91.3% |
| 3jtwA00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.60 | 46.0 | 3.64e-01 | 81.4% | 55.7% |
| 4kxvA02 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.59 | 49.0 | 3.84e-01 | 93.0% | 76.8% |
| 1bozA00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.59 | 45.0 | 3.52e-01 | 81.4% | 52.2% |
| 2zvbA01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.59 | 44.0 | 3.90e-01 | 81.4% | 78.6% |
| 4wxmB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 51.0 | 4.51e-01 | 100.0% | 90.7% |
| 2hxvA02 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.58 | 44.0 | 3.45e-01 | 82.6% | 64.6% |
| 3u31A01 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.57 | 47.0 | 3.92e-01 | 94.2% | 80.5% |
| 3sxuB00 | 3.40.50.10220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › DNA polymerase III, psi subunit | 0.57 | 49.0 | 4.73e-01 | 100.0% | 95.1% |
| 5ej8A02 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.57 | 47.0 | 4.24e-01 | 95.3% | 91.3% |
| 2kx7A00 | 3.40.50.11620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase RcsD, RcsD-ABL domain | 0.56 | 49.0 | 4.59e-01 | 100.0% | 82.0% |
| 3lq1A02 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.56 | 48.0 | 3.91e-01 | 98.8% | 75.1% |
| 3dmyA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 40.0 | 3.45e-01 | 82.6% | 76.2% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4969307 | 2007.2.2.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › PF29287 | 0.76 | 63.0 | 6.48e-01 | 100.0% | 96.2% |
| 4117820 | 2007.1.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase | 0.68 | 60.0 | 5.47e-01 | 100.0% | 93.0% |
| 3588366 | 2007.2.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like | 0.66 | 59.0 | 5.76e-01 | 100.0% | 96.8% |
| 4928140 | 7573.1.1.2 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N | 0.65 | 58.0 | 4.11e-01 | 100.0% | 99.6% |
| 5011062 | 2007.6.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain | 0.63 | 55.0 | 4.64e-01 | 97.7% | 75.3% |
| 5060442 | 2007.2.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 | 0.62 | 54.0 | 4.64e-01 | 100.0% | 97.2% |
| 5022813 | 2004.1.1.175 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA | 0.62 | 54.0 | 3.92e-01 | 100.0% | 98.1% |
| 4932026 | 2007.1.2.48 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › MCR_C | 0.62 | 54.0 | 4.50e-01 | 100.0% | 92.3% |
| 4408816 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.62 | 54.0 | 4.55e-01 | 100.0% | 79.3% |
| 4968801 | 7501.1.1.2 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › RibD_C | 0.62 | 46.0 | 3.43e-01 | 80.2% | 58.3% |
| 3388418 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.62 | 54.0 | 5.02e-01 | 97.7% | 87.3% |
| 4980966 | 7573.1.1.2 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N | 0.61 | 50.0 | 4.28e-01 | 90.7% | 99.3% |
| 5030368 | 7512.1.1.12 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_tran_28_C | 0.61 | 52.0 | 4.21e-01 | 100.0% | 70.0% |
| 3799585 | 7574.1.1.8 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Transket_pyr | 0.60 | 49.0 | 3.86e-01 | 93.0% | 76.9% |
| 3500635 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.59 | 45.0 | 4.53e-01 | 83.7% | 93.3% |
| 3972474 | 7512.1.1.32 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 | 0.58 | 50.0 | 3.93e-01 | 100.0% | 64.0% |
| 4954073 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.57 | 50.0 | 4.12e-01 | 100.0% | 69.3% |
| 5063336 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.57 | 46.0 | 3.67e-01 | 88.4% | 59.4% |
| 4811252 | 2003.1.5.44 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MT-A70 | 0.56 | 42.0 | 3.45e-01 | 81.4% | 98.8% |
| 4000725 | 7574.1.1.8 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Transket_pyr | 0.55 | 48.0 | 3.83e-01 | 100.0% | 69.2% |
D2
high
residues 153-277
Domain cluster:
rep: GWB1_scaffold_combined_curated_closed_complete_prodigal-single.1__X__X__00641__D3-149
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05152.19 best | DUF705 | 22.0 | 1.50e-04 | 90.4% | 26.0% |