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39K_protein
Euk-VirLambdina_fiscellaria_nucleopolyhedrovirus
39K_protein__YP_009133316__Lambdina_fiscellaria_nucleopolyhedrovirus__1642929
Identity
- Accession:
- YP_009133316 ↗
- Protein ID:
- 39K_protein
- Kingdom:
- euk
Quality
65.9
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Lambdina_fiscellaria_nucleopolyhedrovirus
TaxID: 1642929
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-63
Domain cluster:
rep: 39K,_PP31__YP_009165625__Perigonia_lusca_single_nucleopolyhedrovirus__1675865__D19-76
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05311.18 best | Baculo_PP31 | 51.8 | 1.20e-13 | 92.9% | 20.1% |
D2
medium
residues 64-75_101-122_217-230
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p1aB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.64 | 44.0 | 3.16e-01 | 70.8% | 67.8% |
| 1gu2A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.57 | 40.0 | 2.97e-01 | 72.9% | 91.9% |
| 2hlyA00 | 3.10.550.10 | Alpha Beta › Roll › Atu2299-like › Hypothetical protein Atu2299 | 0.53 | 43.0 | 2.97e-01 | 100.0% | 66.3% |
| 2ksnA01 | 1.20.225.20 | Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Ub domain-containing protein, DC-UbP/UBTD2, N-terminal domain | 0.52 | 37.0 | 3.14e-01 | 75.0% | 74.4% |
| 3zqcA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.51 | 35.0 | 3.23e-01 | 72.9% | 54.7% |
| 5ul3A01 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.50 | 39.0 | 2.67e-01 | 81.2% | 71.8% |
| 1qr0A02 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.50 | 42.0 | 3.36e-01 | 97.9% | 75.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030315 | 140.1.1.14 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e | 0.61 | 50.0 | 3.11e-01 | 89.6% | 26.8% |
| 3782381 | 101.1.2.407 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 | 0.54 | 45.0 | 3.32e-01 | 91.7% | 50.4% |
| 3288662 | 620.1.1.5 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › MDMPI_N | 0.52 | 44.0 | 3.12e-01 | 97.9% | 45.2% |