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3C

Euk-Vir

Aichivirus_B

3C__NP_859027__Aichivirus_B__194965

Identity

Accession:
NP_859027 ↗
Protein ID:
3C
Kingdom:
euk

Quality

93.9 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Picornavirales› Picornaviridae› Kobuvirus› Kobuvirus_bejaponia

TaxID: 194965

Cluster

View cluster (187 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-77
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bhgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.85 78.0 7.16e-01 100.0% 90.2%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.84 78.0 7.24e-01 100.0% 85.4%
3k6yA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.82 76.0 6.95e-01 100.0% 81.5%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.81 72.0 6.38e-01 95.9% 82.2%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.80 65.0 4.54e-01 87.7% 39.3%
3h7oA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 67.0 5.71e-01 90.4% 74.1%
3cp7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 70.0 5.99e-01 95.9% 82.9%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 64.0 5.57e-01 90.4% 75.7%
1dleA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 68.0 5.58e-01 98.6% 76.7%
1m9uA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 59.0 5.19e-01 90.4% 78.9%
5f8zA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 60.0 5.14e-01 90.4% 76.8%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 61.0 4.55e-01 97.3% 66.1%
2r0xA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 61.0 4.82e-01 98.6% 78.2%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 61.0 4.64e-01 98.6% 69.1%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 58.0 4.72e-01 91.8% 81.0%
5eokA05 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 62.0 4.34e-01 100.0% 44.8%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 60.0 4.67e-01 97.3% 73.3%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 58.0 4.88e-01 93.2% 83.9%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 57.0 4.79e-01 91.8% 79.4%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 58.0 4.79e-01 91.8% 78.9%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 58.0 4.65e-01 93.2% 72.0%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 60.0 4.42e-01 100.0% 69.5%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 60.0 4.75e-01 98.6% 77.6%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 57.0 4.80e-01 93.2% 79.5%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 56.0 4.05e-01 90.4% 61.5%
2ol5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 56.0 4.24e-01 93.2% 71.0%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 56.0 4.73e-01 91.8% 79.4%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 61.0 5.65e-01 100.0% 86.0%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 58.0 4.43e-01 98.6% 67.0%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 48.0 4.64e-01 76.7% 72.9%
1fyhB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 48.0 4.27e-01 76.7% 69.9%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.66 55.0 4.87e-01 94.5% 71.6%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.65 55.0 4.80e-01 93.2% 69.4%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 52.0 5.22e-01 90.4% 86.5%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 49.0 4.28e-01 79.5% 66.4%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 55.0 4.70e-01 95.9% 84.4%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 54.0 4.32e-01 98.6% 77.6%
5ylyA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 46.0 4.07e-01 80.8% 65.2%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.62 44.0 4.10e-01 75.3% 100.0%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.61 51.0 4.24e-01 94.5% 97.0%
1wxrA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 55.0 3.72e-01 100.0% 31.9%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 41.0 2.69e-01 71.2% 27.3%
2d9rA00 2.40.30.100 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › AF2212/PG0164-like 0.56 40.0 3.86e-01 76.7% 74.1%
2jqjA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 38.0 3.21e-01 74.0% 76.2%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.54 37.0 3.27e-01 71.2% 55.0%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4205419 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.85 79.0 5.40e-01 100.0% 41.7%
376155 1.1.17.2 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.84 78.0 5.55e-01 100.0% 41.3%
3066474 1.1.17.2 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.84 76.0 5.40e-01 100.0% 39.9%
3405652 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.82 75.0 5.02e-01 97.3% 36.3%
3397446 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.82 74.0 4.97e-01 97.3% 34.0%
3530898 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.81 75.0 4.92e-01 100.0% 35.0%
3625701 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.81 73.0 4.81e-01 95.9% 34.3%
3574288 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.81 73.0 4.74e-01 95.9% 35.7%
5051302 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.81 72.0 4.96e-01 95.9% 40.4%
3448106 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.81 75.0 5.02e-01 100.0% 30.0%
3284072 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.80 74.0 5.03e-01 100.0% 32.6%
3783835 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.80 74.0 4.93e-01 100.0% 31.7%
3234434 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.80 72.0 4.76e-01 97.3% 35.2%
None — 0.80 71.0 4.94e-01 95.9% 38.1%
3838513 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.79 74.0 5.08e-01 100.0% 37.9%
170199 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.79 70.0 4.87e-01 95.9% 42.6%
3633439 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.79 72.0 4.80e-01 100.0% 46.3%
2526961 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.78 69.0 4.82e-01 95.9% 37.6%
1096110 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.78 69.0 4.85e-01 95.9% 38.4%
None — 0.78 68.0 4.81e-01 95.9% 38.2%
3940726 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.78 71.0 4.73e-01 100.0% 36.7%
3506871 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.78 71.0 4.27e-01 100.0% 68.8%
4525110 1.1.13.65 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Mycop_pep_DUF31 0.78 69.0 5.59e-01 100.0% 97.1%
3503641 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.78 71.0 5.21e-01 100.0% 66.8%
3997886 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 69.0 4.80e-01 97.3% 39.9%
1217153 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 70.0 4.55e-01 100.0% 37.2%
3918154 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 71.0 4.59e-01 100.0% 33.0%
4073608 1.1.5.57 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.77 69.0 5.15e-01 100.0% 68.3%
3497558 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 68.0 4.56e-01 95.9% 38.0%
134809 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 69.0 4.75e-01 97.3% 37.7%
3500523 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 70.0 4.64e-01 100.0% 47.1%
4532479 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 69.0 4.68e-01 97.3% 35.8%
1680525 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.76 68.0 4.76e-01 97.3% 42.5%
3939059 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 66.0 4.39e-01 95.9% 36.5%
3962625 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.76 66.0 6.09e-01 93.2% 86.7%
4279092 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 67.0 4.53e-01 95.9% 41.6%
3246192 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.76 69.0 4.55e-01 100.0% 49.3%
3213899 1.1.5.73 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin, DUF316 0.75 68.0 4.52e-01 100.0% 49.1%
3416144 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.75 66.0 4.64e-01 100.0% 32.9%
3221539 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.75 69.0 4.55e-01 100.0% 30.8%
3518574 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 68.0 5.27e-01 100.0% 74.8%
3791975 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 65.0 4.35e-01 97.3% 39.6%
3225260 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.74 66.0 4.47e-01 100.0% 51.3%
4973387 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.71 60.0 4.86e-01 93.2% 83.6%
4241887 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 64.0 4.31e-01 100.0% 39.6%
4926888 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.71 59.0 4.93e-01 93.2% 84.6%
5071939 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.71 59.0 4.58e-01 91.8% 82.4%
4431199 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.70 63.0 4.53e-01 100.0% 69.2%
3405914 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 62.0 4.17e-01 98.6% 38.9%
163634 1.1.5.30 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.70 61.0 4.64e-01 98.6% 69.1%
3408736 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 62.0 4.17e-01 98.6% 39.0%
1871771 1.1.5.43 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MrkH_YcgR_like 0.70 58.0 5.03e-01 91.8% 71.2%
4998991 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.69 57.0 4.64e-01 91.8% 84.3%
4963864 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.69 57.0 4.68e-01 91.8% 82.2%
144904 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.68 57.0 4.77e-01 91.8% 79.2%
167706 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.68 57.0 4.80e-01 93.2% 79.5%
3408067 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.68 59.0 4.05e-01 98.6% 38.9%
5016426 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.68 57.0 4.47e-01 93.2% 80.5%
3953421 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.68 57.0 4.61e-01 91.8% 75.0%
3216034 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 51.0 4.02e-01 79.5% 45.3%
3951474 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.68 60.0 4.32e-01 100.0% 65.9%
4129418 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.68 57.0 4.70e-01 94.5% 77.0%
4960378 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.67 56.0 4.50e-01 93.2% 80.7%
5023947 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.67 56.0 4.24e-01 91.8% 39.4%
3248403 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.66 54.0 4.44e-01 90.4% 49.6%
3288278 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.66 55.0 4.48e-01 91.8% 74.8%
2389702 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.64 52.0 4.56e-01 91.8% 72.8%
5032178 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 52.0 3.67e-01 100.0% 74.0%
3696190 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 43.0 3.82e-01 84.9% 74.2%
4980371 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 37.0 3.52e-01 71.2% 84.1%
3697579 10.26.1.0 ↗ beta sandwiches › jelly-roll › Histone H3 binding protein ORF158L › Histone H3 binding protein ORF158L 0.54 44.0 3.96e-01 91.8% 98.1%
4540843 4.1.1.434 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2642 0.51 30.0 3.16e-01 91.8% 64.6%
3514788 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.50 43.0 3.12e-01 95.9% 63.3%
D2 high residues 88-176
PDB
Domain cluster: rep: putative_3C_peptidase__YP_009553718__tremovirus_B1__2058161__D98-201
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00548.27 best Peptidase_C3 25.6 1.60e-05 80.9% 17.5%